Literature DB >> 18041859

Identification of DNA basepairing via tunnel-current decay.

Jin He1, Lisha Lin, Peiming Zhang, Stuart Lindsay.   

Abstract

We propose a new approach for reading the sequence of a DNA molecule passing between electrodes on a nanopore, using hydrogen bond-mediated tunneling signals. The base-electrode interaction is modeled using a nucleo-base-functionalized STM probe that is pulled away from a nucleoside monolayer. Watson-Crick recognition results in slow decay of the tunnel current, which is uniquely characteristic of the basepair in over half the reads. Thirteen independent reads would yield the desired 99.99% accuracy.

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Year:  2007        PMID： 18041859      PMCID： PMC2311509          DOI： 10.1021/nl0726205

Source DB:  PubMed          Journal:  Nano Lett        ISSN： 1530-6984            Impact factor:   11.189


  14 in total

1.  Measurements of single-molecule electromechanical properties.

Authors:  Bingqian Xu; Xiaoyin Xiao; Nongjian J Tao
Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

2.  Reproducible measurement of single-molecule conductivity.

Authors:  X D Cui; A Primak; X Zarate; J Tomfohr; O F Sankey; A L Moore; T A Moore; D Gust; G Harris; S M Lindsay
Journal:  Science       Date:  2001-10-19       Impact factor: 47.728

3.  Electronic signature of DNA nucleotides via transverse transport.

Authors:  Michael Zwolak; Massimiliano Di Ventra
Journal:  Nano Lett       Date:  2005-03       Impact factor: 11.189

Review 4.  Advances in sequencing technology.

Authors:  Eugene Y Chan
Journal:  Mutat Res       Date:  2005-06-03       Impact factor: 2.433

5.  First-principles transversal DNA conductance deconstructed.

Authors:  X-G Zhang; Predrag S Krstić; Radomir Zikić; Jack C Wells; Miguel Fuentes-Cabrera
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

Review 6.  What is the future of electrophoresis in large-scale genomic sequencing?

Authors:  Christopher P Fredlake; Daniel G Hert; Elaine R Mardis; Annelise E Barron
Journal:  Electrophoresis       Date:  2006-10       Impact factor: 3.535

7.  Complementary base-pair-facilitated electron tunneling for electrically pinpointing complementary nucleobases.

Authors:  Takahito Ohshiro; Yoshio Umezawa
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-22       Impact factor: 11.205

8.  Influence of the environment and probes on rapid DNA sequencing via transverse electronic transport.

Authors:  Johan Lagerqvist; Michael Zwolak; Massimiliano Di Ventra
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

9.  Adsorbate deformation as a contrast mechanism in STM images of biopolymers in an aqueous environment: images of the unstained, hydrated DNA double helix.

Authors:  S M Lindsay; T Thundat; L Nagahara
Journal:  J Microsc       Date:  1988-10       Impact factor: 1.758

10.  Base pairing structure in the poly d(G-T) double helix: wobble base pairs.

Authors:  T A Early; J Olmsted; D R Kearns; A G Lezius
Journal:  Nucleic Acids Res       Date:  1978-06       Impact factor: 16.971
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  22 in total

1.  Long lifetime of hydrogen-bonded DNA basepairs by force spectroscopy.

Authors:  Alexander Fuhrmann; Sebastian Getfert; Qiang Fu; Peter Reimann; Stuart Lindsay; Robert Ros
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

2.  Identifying single nucleotides by tunnelling current.

Authors:  Makusu Tsutsui; Masateru Taniguchi; Kazumichi Yokota; Tomoji Kawai
Journal:  Nat Nanotechnol       Date:  2010-03-21       Impact factor: 39.213

Review 3.  Recognition tunneling.

Authors:  Stuart Lindsay; Jin He; Otto Sankey; Prokop Hapala; Pavel Jelinek; Peiming Zhang; Shuai Chang; Shuo Huang
Journal:  Nanotechnology       Date:  2010-06-04       Impact factor: 3.874

4.  Recognition tunneling measurement of the conductance of DNA bases embedded in self-assembled monolayers.

Authors:  Shuo Huang; Shuai Chang; Jin He; Peiming Zhang; Feng Liang; Michael Tuchband; Shengqing Li; Stuart Lindsay
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2010-12-09       Impact factor: 4.126

5.  Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore.

Authors:  David Stoddart; Andrew J Heron; Ellina Mikhailova; Giovanni Maglia; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-20       Impact factor: 11.205

Review 6.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

7.  Fabrication and characterization of nanopores with insulated transverse nanoelectrodes for DNA sensing in salt solution.

Authors:  Ken Healy; Vishva Ray; Lauren J Willis; Neil Peterman; John Bartel; Marija Drndić
Journal:  Electrophoresis       Date:  2012-12       Impact factor: 3.535

8.  Transverse tunneling through DNA hydrogen bonded to an electrode.

Authors:  Jin He; Lisha Lin; Peiming Zhang; Quinn Spadola; Zhiqun Xi; Qiang Fu; Stuart Lindsay
Journal:  Nano Lett       Date:  2008-07-29       Impact factor: 11.189

9.  Electronic signatures of all four DNA nucleosides in a tunneling gap.

Authors:  Shuai Chang; Shuo Huang; Jin He; Feng Liang; Peiming Zhang; Shengqing Li; Xiang Chen; Otto Sankey; Stuart Lindsay
Journal:  Nano Lett       Date:  2010-03-10       Impact factor: 11.189

10.  Tunnel conductance of Watson-Crick nucleoside-base pairs from telegraph noise.

Authors:  Shuai Chang; Jin He; Lisha Lin; Peiming Zhang; Feng Liang; Michael Young; Shuo Huang; Stuart Lindsay
Journal:  Nanotechnology       Date:  2009-04-14       Impact factor: 3.874
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