Literature DB >> 16679371

First-principles transversal DNA conductance deconstructed.

X-G Zhang1, Predrag S Krstić, Radomir Zikić, Jack C Wells, Miguel Fuentes-Cabrera.   

Abstract

First-principles calculation of the transverse conductance across DNA fragments placed between gold nanoelectrodes reveals that such conductance describes electron tunneling that depends critically on geometrical rather than electronic-structure properties. By factoring the first-principles result into two simple and approximately independent tunneling factors, we show that the conductances of the A, C, G, and T fragments differ only because of their sizes: the larger is the DNA base, the smaller its distance to the electrode, and the larger its conductance. Because the geometrical factors are difficult to control in an experiment, the direct-current measurements across DNA with gold contact electrodes may not be a convenient approach to DNA sequencing.

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Year:  2006        PMID: 16679371      PMCID: PMC1479083          DOI: 10.1529/biophysj.106.085548

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  8 in total

1.  Direct measurement of electrical transport through DNA molecules.

Authors:  D Porath; A Bezryadin; S de Vries; C Dekker
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

2.  Electrical conduction through DNA molecules.

Authors:  H W Fink; C Schönenberger
Journal:  Nature       Date:  1999-04-01       Impact factor: 49.962

3.  Absence of dc-conductivity in lambda-DNA.

Authors:  P J de Pablo; F Moreno-Herrero; J Colchero; J Gómez Herrero; P Herrero; A M Baró; P Ordejón; J M Soler; E Artacho
Journal:  Phys Rev Lett       Date:  2000-12-04       Impact factor: 9.161

4.  Sequence dependent DNA-mediated conduction.

Authors:  Stephan Roche
Journal:  Phys Rev Lett       Date:  2003-09-03       Impact factor: 9.161

5.  Band-gap tunneling states in DNA.

Authors:  Hao Wang; James P Lewis; Otto F Sankey
Journal:  Phys Rev Lett       Date:  2004-06-28       Impact factor: 9.161

6.  Reproducible measurement of single-molecule conductivity.

Authors:  X D Cui; A Primak; X Zarate; J Tomfohr; O F Sankey; A L Moore; T A Moore; D Gust; G Harris; S M Lindsay
Journal:  Science       Date:  2001-10-19       Impact factor: 47.728

7.  Electronic signature of DNA nucleotides via transverse transport.

Authors:  Michael Zwolak; Massimiliano Di Ventra
Journal:  Nano Lett       Date:  2005-03       Impact factor: 11.189

8.  Genomes for all.

Authors:  George M Church
Journal:  Sci Am       Date:  2006-01       Impact factor: 2.142

  8 in total
  12 in total

1.  Identification of DNA basepairing via tunnel-current decay.

Authors:  Jin He; Lisha Lin; Peiming Zhang; Stuart Lindsay
Journal:  Nano Lett       Date:  2007-11-28       Impact factor: 11.189

2.  Nucleotide capacitance calculation for DNA sequencing.

Authors:  Jun-Qiang Lu; X-G Zhang
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

3.  Electrochemical tunnelling sensors and their potential applications.

Authors:  T Albrecht
Journal:  Nat Commun       Date:  2012-05-08       Impact factor: 14.919

4.  Nanopore with Transverse Nanoelectrodes for Electrical Characterization and Sequencing of DNA.

Authors:  Brian C Gierhart; David G Howitt; Shiahn J Chen; Zhineng Zhu; David E Kotecki; Rosemary L Smith; Scott D Collins
Journal:  Sens Actuators B Chem       Date:  2008-06-16       Impact factor: 7.460

5.  A molecular dynamics simulation study on trapping ions in a nanoscale Paul trap.

Authors:  Xiongce Zhao; Predrag S Krstic
Journal:  Nanotechnology       Date:  2008-04-08       Impact factor: 3.874

6.  Fabrication and characterization of nanopores with insulated transverse nanoelectrodes for DNA sensing in salt solution.

Authors:  Ken Healy; Vishva Ray; Lauren J Willis; Neil Peterman; John Bartel; Marija Drndić
Journal:  Electrophoresis       Date:  2012-12       Impact factor: 3.535

7.  Physical model for recognition tunneling.

Authors:  Predrag Krstić; Brian Ashcroft; Stuart Lindsay
Journal:  Nanotechnology       Date:  2015-02-03       Impact factor: 3.874

8.  A long DNA segment in a linear nanoscale Paul trap.

Authors:  Sony Joseph; Weihua Guan; Mark A Reed; Predrag S Krstic
Journal:  Nanotechnology       Date:  2009-11-30       Impact factor: 3.874

9.  Insights into electron tunneling across hydrogen-bonded base-pairs in complete molecular circuits for single-stranded DNA sequencing.

Authors:  Myeong H Lee; Otto F Sankey
Journal:  J Phys Condens Matter       Date:  2009-01-21       Impact factor: 2.333

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

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