Literature DB >> 18041268

Tensor splines for interpolation and approximation of DT-MRI with applications to segmentation of isolated rat hippocampi.

Angelos Barmpoutis1, Baba C Vemuri, Timothy M Shepherd, John R Forder.   

Abstract

In this paper, we present novel algorithms for statistically robust interpolation and approximation of diffusion tensors-which are symmetric positive definite (SPD) matrices-and use them in developing a significant extension to an existing probabilistic algorithm for scalar field segmentation, in order to segment diffusion tensor magnetic resonance imaging (DT-MRI) datasets. Using the Riemannian metric on the space of SPD matrices, we present a novel and robust higher order (cubic) continuous tensor product of B-splines algorithm to approximate the SPD diffusion tensor fields. The resulting approximations are appropriately dubbed tensor splines. Next, we segment the diffusion tensor field by jointly estimating the label (assigned to each voxel) field, which is modeled by a Gauss Markov measure field (GMMF) and the parameters of each smooth tensor spline model representing the labeled regions. Results of interpolation, approximation, and segmentation are presented for synthetic data and real diffusion tensor fields from an isolated rat hippocampus, along with validation. We also present comparisons of our algorithms with existing methods and show significantly improved results in the presence of noise as well as outliers.

Entities:  

Mesh:

Year:  2007        PMID: 18041268      PMCID: PMC2759271          DOI: 10.1109/TMI.2007.903195

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  11 in total

1.  Spatial transformations of diffusion tensor magnetic resonance images.

Authors:  D C Alexander; C Pierpaoli; P J Basser; J C Gee
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

2.  A continuous tensor field approximation of discrete DT-MRI data for extracting microstructural and architectural features of tissue.

Authors:  Sinisa Pajevic; Akram Aldroubi; Peter J Basser
Journal:  J Magn Reson       Date:  2002-01       Impact factor: 2.229

3.  A constrained variational principle for direct estimation and smoothing of the diffusion tensor field from DWI.

Authors:  Z Wang; B C Vemuri; Y Chen; T Mareci
Journal:  Inf Process Med Imaging       Date:  2003-07

4.  DTI segmentation using an information theoretic tensor dissimilarity measure.

Authors:  Zhizhou Wang; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2005-10       Impact factor: 10.048

5.  A rigorous framework for diffusion tensor calculus.

Authors:  P G Batchelor; M Moakher; D Atkinson; F Calamante; A Connelly
Journal:  Magn Reson Med       Date:  2005-01       Impact factor: 4.668

6.  Structural insights from high-resolution diffusion tensor imaging and tractography of the isolated rat hippocampus.

Authors:  Timothy M Shepherd; Evren Ozarslan; Michael A King; Thomas H Mareci; Stephen J Blackband
Journal:  Neuroimage       Date:  2006-06-27       Impact factor: 6.556

7.  DTI segmentation by statistical surface evolution.

Authors:  Christophe Lenglet; Mikaël Rousson; Rachid Deriche
Journal:  IEEE Trans Med Imaging       Date:  2006-06       Impact factor: 10.048

8.  Fast and simple calculus on tensors in the log-Euclidean framework.

Authors:  Vincent Arsigny; Pierre Fillard; Xavier Pennec; Nicholas Ayache
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

9.  Robust anisotropic diffusion.

Authors:  M J Black; G Sapiro; D H Marimont; D Heeger
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

Review 10.  The medial temporal lobe.

Authors:  Larry R Squire; Craig E L Stark; Robert E Clark
Journal:  Annu Rev Neurosci       Date:  2004       Impact factor: 12.449

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  14 in total

1.  Efficient Recursive Algorithms for Computing the Mean Diffusion Tensor and Applications to DTI Segmentation

Authors:  Guang Cheng; Hesamoddin Salehian; Baba C Vemuri
Journal:  Comput Vis ECCV       Date:  2012

2.  Local white matter geometry indices from diffusion tensor gradients.

Authors:  Peter Savadjiev; Gordon Kindlmann; Sylvain Bouix; Martha E Shenton; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

3.  Multiple-echo diffusion tensor acquisition technique (MEDITATE) on a 3T clinical scanner.

Authors:  Steven H Baete; Gene Cho; Eric E Sigmund
Journal:  NMR Biomed       Date:  2013-07-05       Impact factor: 4.044

4.  The geometric median on Riemannian manifolds with application to robust atlas estimation.

Authors:  P Thomas Fletcher; Suresh Venkatasubramanian; Sarang Joshi
Journal:  Neuroimage       Date:  2008-11-13       Impact factor: 6.556

5.  APPROXIMATING SYMMETRIC POSITIVE SEMIDEFINITE TENSORS OF EVEN ORDER().

Authors:  Angelos Barmpoutis; Ho Jeffrey; Baba C Vemuri
Journal:  SIAM J Imaging Sci       Date:  2012-03-20       Impact factor: 2.867

6.  Local Polynomial Regression for Symmetric Positive Definite Matrices.

Authors:  Ying Yuan; Hongtu Zhu; Weili Lin; J S Marron
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2012-03-16       Impact factor: 4.488

7.  Covariant Image Representation with Applications to Classification Problems in Medical Imaging.

Authors:  Dohyung Seo; Jeffrey Ho; Baba C Vemuri
Journal:  Int J Comput Vis       Date:  2015-07-25       Impact factor: 7.410

8.  Local white matter geometry from diffusion tensor gradients.

Authors:  Peter Savadjiev; Gordon L Kindlmann; Sylvain Bouix; Martha E Shenton; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2009-11-05       Impact factor: 6.556

9.  Regularized positive-definite fourth order tensor field estimation from DW-MRI.

Authors:  Angelos Barmpoutis; Min Sig Hwang; Dena Howland; John R Forder; Baba C Vemuri
Journal:  Neuroimage       Date:  2008-11-13       Impact factor: 6.556

10.  VARYING COEFFICIENT MODEL FOR MODELING DIFFUSION TENSORS ALONG WHITE MATTER TRACTS.

Authors:  Ying Yuan; Hongtu Zhu; Martin Styner; John H Gilmore; J S Marron
Journal:  Ann Appl Stat       Date:  2013-03       Impact factor: 2.083

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