Literature DB >> 18023126

Transposons in C. elegans.

Jean-Louis Bessereau1.   

Abstract

Transposons are discrete segments of DNA capable of moving through the genome of their host via an RNA intermediate in the case of class I retrotransposon or via a "cut-and-paste" mechanism for class II DNA transposons. Since transposons take advantage of their host's cellular machinery to proliferate in the genome and enter new hosts, transposable elements can be viewed as parasitic or "selfish DNA". However, transposons may have been beneficial for their hosts as genome evolution drivers, thus providing an example of molecular mutualism. Interactions between transposon and C. elegans research were undoubtedly mutualistic, leading to the advent of needed genomic tools to drive C. elegans research while providing insights into the transposition field. Tc1, the first C. elegans transposon to be identified, turned out to be the founding member of a widespread family of mobile elements: the Tc1/mariner superfamily. The investigation into transposition regulation in C. elegans has uncovered an unforeseen link between transposition, genome surveillance and RNA interference. Conversely, transposons were utilized soon after their identification to inactivate and clone genes, providing some of the first molecular identities of C. elegans genes. Recent results suggest that transposons might provide a means to engineer site-directed mutations into the C. elegans genome. This article describes the different transposons present in the C. elegans genome with a specific emphasis on the ones that proved to be mobile under laboratory conditions. Mechanisms and control of transposition are discussed briefly. Some tools based on the use of transposons for C. elegans research are presented at the end of this review.

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Year:  2006        PMID: 18023126      PMCID: PMC4781069          DOI: 10.1895/wormbook.1.70.1

Source DB:  PubMed          Journal:  WormBook        ISSN: 1551-8507


  41 in total

1.  Degradation of the Repetitive Genomic Landscape in a Close Relative of Caenorhabditis elegans.

Authors:  Gavin C Woodruff; Anastasia A Teterina
Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

Review 2.  Cancer models in Caenorhabditis elegans.

Authors:  Natalia V Kirienko; Kumaran Mani; David S Fay
Journal:  Dev Dyn       Date:  2010-05       Impact factor: 3.780

3.  High-resolution array comparative genomic hybridization analysis reveals unanticipated complexity of genetic deficiencies on chromosome V in Caenorhabditis elegans.

Authors:  Martin R Jones; Shu Yi Chua; Nigel J O'Neil; Robert C Johnsen; Ann M Rose; David L Baillie
Journal:  Mol Genet Genomics       Date:  2009-03-29       Impact factor: 3.291

4.  Internal deletions of transposable elements: the case of Lemi elements.

Authors:  Abdelhakime Negoua; Jacques-Deric Rouault; Mohamed Chakir; Pierre Capy
Journal:  Genetica       Date:  2013-10-11       Impact factor: 1.082

Review 5.  From genes to function: the C. elegans genetic toolbox.

Authors:  Thomas Boulin; Oliver Hobert
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2011-11-28       Impact factor: 5.814

6.  Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism.

Authors:  Charles H Opperman; David M Bird; Valerie M Williamson; Dan S Rokhsar; Mark Burke; Jonathan Cohn; John Cromer; Steve Diener; Jim Gajan; Steve Graham; T D Houfek; Qingli Liu; Therese Mitros; Jennifer Schaff; Reenah Schaffer; Elizabeth Scholl; Bryon R Sosinski; Varghese P Thomas; Eric Windham
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-22       Impact factor: 11.205

7.  Identifying insertion mutations by whole-genome sequencing.

Authors:  Harold E Smith
Journal:  Biotechniques       Date:  2011-02       Impact factor: 1.993

Review 8.  Forward and reverse mutagenesis in C. elegans.

Authors:  Lena M Kutscher; Shai Shaham
Journal:  WormBook       Date:  2014-01-17

Review 9.  Other model organisms for sarcomeric muscle diseases.

Authors:  John Sparrow; Simon M Hughes; Laurent Segalat
Journal:  Adv Exp Med Biol       Date:  2008       Impact factor: 2.622

10.  Genomic sequence of a mutant strain of Caenorhabditis elegans with an altered recombination pattern.

Authors:  Ann M Rose; Nigel J O'Neil; Mikhail Bilenky; Yaron S Butterfield; Nawar Malhis; Stephane Flibotte; Martin R Jones; Marco Marra; David L Baillie; Steven J M Jones
Journal:  BMC Genomics       Date:  2010-02-23       Impact factor: 3.969

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