Literature DB >> 18021750

3D structure of Syk kinase determined by single-particle electron microscopy.

Ernesto Arias-Palomo1, María A Recuero-Checa, Xosé R Bustelo, Oscar Llorca.   

Abstract

The cytoplasmic Syk kinase plays key roles in immune responses and comprises two N-terminal regulatory Src homology 2 (SH2) domains followed by a catalytic region. Atomic structures of these domains have only been solved in isolation. To gain insights into the three-dimensional structure of full-length Syk, we have used single-particle electron microscopy. Syk acquires a closed conformation resembling the inhibited structure of Zap-70, another member of the Syk family. Such configuration suggests an inhibition of the N-terminal domains on its catalytic activity. The phosphotyrosine binding pockets of both SH2 domains are not occluded and they could interact with other phosphoproteins.

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Year:  2007        PMID: 18021750      PMCID: PMC2186377          DOI: 10.1016/j.bbapap.2007.10.008

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  33 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Multi-resolution contour-based fitting of macromolecular structures.

Authors:  Pablo Chacón; Willy Wriggers
Journal:  J Mol Biol       Date:  2002-03-29       Impact factor: 5.469

Review 3.  Structure and function of Syk protein-tyrosine kinase.

Authors:  K Sada; T Takano; S Yanagi; H Yamamura
Journal:  J Biochem       Date:  2001-08       Impact factor: 3.387

Review 4.  Proximal protein tyrosine kinases in immunoreceptor signaling.

Authors:  S Latour; A Veillette
Journal:  Curr Opin Immunol       Date:  2001-06       Impact factor: 7.486

5.  Development of a high-throughput fluoroimmunoassay for Syk kinase and Syk kinase inhibitors.

Authors:  Noriyuki Yamamoto; Haruki Hasegawa; Hitomi Seki; Karl Ziegelbauer; Takahiro Yasuda
Journal:  Anal Biochem       Date:  2003-04-15       Impact factor: 3.365

6.  Crystal structure and NMR studies of the apo SH2 domains of ZAP-70: two bikes rather than a tandem.

Authors:  Rutger H A Folmer; Stefan Geschwindner; Yafeng Xue
Journal:  Biochemistry       Date:  2002-12-03       Impact factor: 3.162

7.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

8.  Activation of Zap-70 tyrosine kinase due to a structural rearrangement induced by tyrosine phosphorylation and/or ITAM binding.

Authors:  C Visco; G Magistrelli; R Bosotti; R Perego; L Rusconi; S Toma; M Zamai; O Acuto; A Isacchi
Journal:  Biochemistry       Date:  2000-03-14       Impact factor: 3.162

9.  Tyrosine phosphorylation mediates both activation and downmodulation of the biological activity of Vav.

Authors:  M López-Lago; H Lee; C Cruz; N Movilla; X R Bustelo
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

10.  The Syk tyrosine kinase suppresses malignant growth of human breast cancer cells.

Authors:  P J Coopman; M T Do; M Barth; E T Bowden; A J Hayes; E Basyuk; J K Blancato; P R Vezza; S W McLeskey; P H Mangeat; S C Mueller
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

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  11 in total

1.  Conformational rearrangements upon Syk auto-phosphorylation.

Authors:  Ernesto Arias-Palomo; María A Recuero-Checa; Xosé R Bustelo; Oscar Llorca
Journal:  Biochim Biophys Acta       Date:  2009-05-03

2.  Image processing for electron microscopy single-particle analysis using XMIPP.

Authors:  Sjors H W Scheres; Rafael Núñez-Ramírez; Carlos O S Sorzano; José María Carazo; Roberto Marabini
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

3.  Entropic allostery dominates the phosphorylation-dependent regulation of Syk tyrosine kinase release from immunoreceptor tyrosine-based activation motifs.

Authors:  Chao Feng; Amitava Roy; Carol Beth Post
Journal:  Protein Sci       Date:  2018-10-02       Impact factor: 6.725

4.  Biophysical and mechanistic insights into novel allosteric inhibitor of spleen tyrosine kinase.

Authors:  Justin Hall; Ann Aulabaugh; Francis Rajamohan; Shenping Liu; Neelu Kaila; Zhao-Kui Wan; Mark Ryan; Rachelle Magyar; Xiayang Qiu
Journal:  J Biol Chem       Date:  2012-01-04       Impact factor: 5.157

5.  Engineered nanostructures of antigen provide an effective means for regulating mast cell activation.

Authors:  Zhao Deng; I-Chun Weng; Jie-Ren Li; Huan-Yuan Chen; Fu-Tong Liu; Gang-yu Liu
Journal:  ACS Nano       Date:  2011-11-07       Impact factor: 15.881

Review 6.  The tyrosine kinase network regulating mast cell activation.

Authors:  Alasdair M Gilfillan; Juan Rivera
Journal:  Immunol Rev       Date:  2009-03       Impact factor: 12.988

7.  Differential dephosphorylation of the FcRgamma immunoreceptor tyrosine-based activation motif tyrosines with dissimilar potential for activating Syk.

Authors:  Toshiyuki Yamashita; Ryo Suzuki; Peter S Backlund; Yumi Yamashita; Alfred L Yergey; Juan Rivera
Journal:  J Biol Chem       Date:  2008-08-19       Impact factor: 5.157

Review 8.  Syk and pTyr'd: Signaling through the B cell antigen receptor.

Authors:  Robert L Geahlen
Journal:  Biochim Biophys Acta       Date:  2009-03-21

Review 9.  The SYK tyrosine kinase: a crucial player in diverse biological functions.

Authors:  Attila Mócsai; Jürgen Ruland; Victor L J Tybulewicz
Journal:  Nat Rev Immunol       Date:  2010-06       Impact factor: 53.106

10.  Tyrosine kinase syk non-enzymatic inhibitors and potential anti-allergic drug-like compounds discovered by virtual and in vitro screening.

Authors:  Bruno O Villoutreix; Guillaume Laconde; David Lagorce; Pierre Martineau; Maria A Miteva; Piona Dariavach
Journal:  PLoS One       Date:  2011-06-20       Impact factor: 3.240

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