Literature DB >> 18007635

Construction of conditional analog-sensitive kinase alleles in the fission yeast Schizosaccharomyces pombe.

Juraj Gregan1, Chao Zhang, Cornelia Rumpf, Lubos Cipak, Zhang Li, Pelin Uluocak, Kim Nasmyth, Kevan M Shokat.   

Abstract

Reversible protein phosphorylation is a major regulatory mechanism in a cell. A chemical-genetic strategy to conditionally inactivate protein kinases has been developed recently. Mutating a single residue in the ATP-binding pocket confers sensitivity to small-molecule inhibitors. The inhibitor can only bind to the mutant kinase and not to any other wild-type kinase, allowing specific inactivation of the modified kinase. Here, we describe a protocol to construct conditional analog-sensitive kinase alleles in the fission yeast Schizosaccharomyces pombe. This protocol can be completed in about 3 weeks and should be applicable to other organisms as well.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 18007635      PMCID: PMC2957860          DOI: 10.1038/nprot.2007.447

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  35 in total

1.  Identification of new JNK substrate using ATP pocket mutant JNK and a corresponding ATP analogue.

Authors:  H Habelhah; K Shah; L Huang; A L Burlingame; K M Shokat; Z Ronai
Journal:  J Biol Chem       Date:  2001-03-19       Impact factor: 5.157

2.  Uninterrupted MCM2-7 function required for DNA replication fork progression.

Authors:  K Labib; J A Tercero; J F Diffley
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

3.  A chemical genetic screen for direct v-Src substrates reveals ordered assembly of a retrograde signaling pathway.

Authors:  Kavita Shah; Kevan M Shokat
Journal:  Chem Biol       Date:  2002-01

4.  Essential role of MCM proteins in premeiotic DNA replication.

Authors:  Karola Lindner; Juraj Gregán; Stuart Montgomery; Stephen E Kearsey
Journal:  Mol Biol Cell       Date:  2002-02       Impact factor: 4.138

5.  Specificity and mechanism of action of some commonly used protein kinase inhibitors.

Authors:  S P Davies; H Reddy; M Caivano; P Cohen
Journal:  Biochem J       Date:  2000-10-01       Impact factor: 3.857

6.  Engineering of the myosin-ibeta nucleotide-binding pocket to create selective sensitivity to N(6)-modified ADP analogs.

Authors:  P G Gillespie; S K Gillespie; J A Mercer; K Shah; K M Shokat
Journal:  J Biol Chem       Date:  1999-10-29       Impact factor: 5.157

7.  Chemical inhibition of the Pho85 cyclin-dependent kinase reveals a role in the environmental stress response.

Authors:  A S Carroll; A C Bishop; J L DeRisi; K M Shokat; E K O'Shea
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-23       Impact factor: 11.205

8.  A chemical switch for inhibitor-sensitive alleles of any protein kinase.

Authors:  A C Bishop; J A Ubersax; D T Petsch; D P Matheos; N S Gray; J Blethrow; E Shimizu; J Z Tsien; P G Schultz; M D Rose; J L Wood; D O Morgan; K M Shokat
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

9.  A chemical-genetic strategy implicates myosin-1c in adaptation by hair cells.

Authors:  Jeffrey R Holt; Susan K H Gillespie; D William Provance; Kavita Shah; Kevan M Shokat; David P Corey; John A Mercer; Peter G Gillespie
Journal:  Cell       Date:  2002-02-08       Impact factor: 41.582

10.  The genome sequence of Schizosaccharomyces pombe.

Authors:  V Wood; R Gwilliam; M-A Rajandream; M Lyne; R Lyne; A Stewart; J Sgouros; N Peat; J Hayles; S Baker; D Basham; S Bowman; K Brooks; D Brown; S Brown; T Chillingworth; C Churcher; M Collins; R Connor; A Cronin; P Davis; T Feltwell; A Fraser; S Gentles; A Goble; N Hamlin; D Harris; J Hidalgo; G Hodgson; S Holroyd; T Hornsby; S Howarth; E J Huckle; S Hunt; K Jagels; K James; L Jones; M Jones; S Leather; S McDonald; J McLean; P Mooney; S Moule; K Mungall; L Murphy; D Niblett; C Odell; K Oliver; S O'Neil; D Pearson; M A Quail; E Rabbinowitsch; K Rutherford; S Rutter; D Saunders; K Seeger; S Sharp; J Skelton; M Simmonds; R Squares; S Squares; K Stevens; K Taylor; R G Taylor; A Tivey; S Walsh; T Warren; S Whitehead; J Woodward; G Volckaert; R Aert; J Robben; B Grymonprez; I Weltjens; E Vanstreels; M Rieger; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; A Düsterhöft; C Fritzc; E Holzer; D Moestl; H Hilbert; K Borzym; I Langer; A Beck; H Lehrach; R Reinhardt; T M Pohl; P Eger; W Zimmermann; H Wedler; R Wambutt; B Purnelle; A Goffeau; E Cadieu; S Dréano; S Gloux; V Lelaure; S Mottier; F Galibert; S J Aves; Z Xiang; C Hunt; K Moore; S M Hurst; M Lucas; M Rochet; C Gaillardin; V A Tallada; A Garzon; G Thode; R R Daga; L Cruzado; J Jimenez; M Sánchez; F del Rey; J Benito; A Domínguez; J L Revuelta; S Moreno; J Armstrong; S L Forsburg; L Cerutti; T Lowe; W R McCombie; I Paulsen; J Potashkin; G V Shpakovski; D Ussery; B G Barrell; P Nurse; L Cerrutti
Journal:  Nature       Date:  2002-02-21       Impact factor: 49.962

View more
  26 in total

1.  Synchronized fission yeast meiosis using an ATP analog-sensitive Pat1 protein kinase.

Authors:  Lubos Cipak; Silvia Polakova; Randy W Hyppa; Gerald R Smith; Juraj Gregan
Journal:  Nat Protoc       Date:  2014-01-02       Impact factor: 13.491

2.  Chemical genetic approach for kinase-substrate mapping by covalent capture of thiophosphopeptides and analysis by mass spectrometry.

Authors:  Nicholas T Hertz; Beatrice T Wang; Jasmina J Allen; Chao Zhang; Arvin C Dar; Alma L Burlingame; Kevan M Shokat
Journal:  Curr Protoc Chem Biol       Date:  2010-03-01

3.  Lifespan extension by calorie restriction relies on the Sty1 MAP kinase stress pathway.

Authors:  Alice Zuin; Mercè Carmona; Isabel Morales-Ivorra; Natalia Gabrielli; Ana P Vivancos; José Ayté; Elena Hidalgo
Journal:  EMBO J       Date:  2010-01-14       Impact factor: 11.598

Review 4.  Receptor-like kinases shape the plant.

Authors:  Ive De Smet; Ute Voss; Gerd Jürgens; Tom Beeckman
Journal:  Nat Cell Biol       Date:  2009-10       Impact factor: 28.824

5.  Generation of a set of conditional analog-sensitive alleles of essential protein kinases in the fission yeast Schizosaccharomyces pombe.

Authors:  Lubos Cipak; Chao Zhang; Ines Kovacikova; Cornelia Rumpf; Eva Miadokova; Kevan M Shokat; Juraj Gregan
Journal:  Cell Cycle       Date:  2011-10-15       Impact factor: 4.534

6.  Allele-sensitive mutant, Itkas, reveals that Itk kinase activity is required for Th1, Th2, Th17, and iNKT-cell cytokine production.

Authors:  Arun Kannan; YongChan Lee; Qian Qi; Weishan Huang; Ah-Reum Jeong; Sarah Ohnigian; Avery August
Journal:  Eur J Immunol       Date:  2015-06-10       Impact factor: 5.532

7.  Regulation of RNA polymerase III transcription involves SCH9-dependent and SCH9-independent branches of the target of rapamycin (TOR) pathway.

Authors:  Jaehoon Lee; Robyn D Moir; Ian M Willis
Journal:  J Biol Chem       Date:  2009-03-19       Impact factor: 5.157

8.  Phosphoregulation of the cytokinetic protein Fic1 contributes to fission yeast growth polarity establishment.

Authors:  K Adam Bohnert; Anthony M Rossi; Quan-Wen Jin; Jun-Song Chen; Kathleen L Gould
Journal:  J Cell Sci       Date:  2020-09-17       Impact factor: 5.285

9.  S. pombe genome deletion project: an update.

Authors:  Mario Spirek; Zsigmond Benko; Martina Carnecka; Cornelia Rumpf; Lubos Cipak; Monika Batova; Ivana Marova; Miyoung Nam; Dong-Uk Kim; Han-Oh Park; Jacqueline Hayles; Kwang-Lae Hoe; Paul Nurse; Juraj Gregan
Journal:  Cell Cycle       Date:  2010-06-15       Impact factor: 4.534

10.  Laser microsurgery provides evidence for merotelic kinetochore attachments in fission yeast cells lacking Pcs1 or Clr4.

Authors:  Cornelia Rumpf; Lubos Cipak; Alexander Schleiffer; Alison Pidoux; Karl Mechtler; Iva M Tolić-Nørrelykke; Juraj Gregan
Journal:  Cell Cycle       Date:  2010-10-03       Impact factor: 4.534

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.