Literature DB >> 20519959

S. pombe genome deletion project: an update.

Mario Spirek1, Zsigmond Benko, Martina Carnecka, Cornelia Rumpf, Lubos Cipak, Monika Batova, Ivana Marova, Miyoung Nam, Dong-Uk Kim, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Paul Nurse, Juraj Gregan.   

Abstract

The fission yeast Schizosaccharomyces pombe is a model organism used widely to study various aspects of eukaryotic biology. A collection of heterozygous diploid strains containing individual deletions in nearly all S. pombe genes has been created using a PCR based strategy. However, deletion of some genes has not been possible using this methodology. Here we use an efficient knockout strategy based on plasmids that contain large regions homologous to the target gene to delete an additional 29 genes. The collection of deletion mutants now covers 99% of the fission yeast open reading frames.

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Year:  2010        PMID: 20519959      PMCID: PMC3132452          DOI: 10.4161/cc.9.12.11914

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  27 in total

1.  Kinetochore recruitment of two nucleolar proteins is required for homolog segregation in meiosis I.

Authors:  Kirsten P Rabitsch; Mark Petronczki; Jean Paul Javerzat; Sylvie Genier; Barbara Chwalla; Alex Schleiffer; Tomoyuki U Tanaka; Kim Nasmyth
Journal:  Dev Cell       Date:  2003-04       Impact factor: 12.270

2.  GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.

Authors:  Elizabeth I Boyle; Shuai Weng; Jeremy Gollub; Heng Jin; David Botstein; J Michael Cherry; Gavin Sherlock
Journal:  Bioinformatics       Date:  2004-08-05       Impact factor: 6.937

Review 3.  Maximizing the potential of functional genomics.

Authors:  Lars M Steinmetz; Ronald W Davis
Journal:  Nat Rev Genet       Date:  2004-03       Impact factor: 53.242

4.  Novel genes required for meiotic chromosome segregation are identified by a high-throughput knockout screen in fission yeast.

Authors:  Juraj Gregan; Peter K Rabitsch; Benjamin Sakem; Ortansa Csutak; Vitaly Latypov; Elisabeth Lehmann; Juerg Kohli; Kim Nasmyth
Journal:  Curr Biol       Date:  2005-09-20       Impact factor: 10.834

5.  The chemical genomic portrait of yeast: uncovering a phenotype for all genes.

Authors:  Maureen E Hillenmeyer; Eula Fung; Jan Wildenhain; Sarah E Pierce; Shawn Hoon; William Lee; Michael Proctor; Robert P St Onge; Mike Tyers; Daphne Koller; Russ B Altman; Ronald W Davis; Corey Nislow; Guri Giaever
Journal:  Science       Date:  2008-04-18       Impact factor: 47.728

6.  High-efficiency gene targeting in Schizosaccharomyces pombe using a modular, PCR-based approach with long tracts of flanking homology.

Authors:  M D Krawchuk; W P Wahls
Journal:  Yeast       Date:  1999-09-30       Impact factor: 3.239

7.  Molecular genetic analysis of fission yeast Schizosaccharomyces pombe.

Authors:  S Moreno; A Klar; P Nurse
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

8.  The genome sequence of Schizosaccharomyces pombe.

Authors:  V Wood; R Gwilliam; M-A Rajandream; M Lyne; R Lyne; A Stewart; J Sgouros; N Peat; J Hayles; S Baker; D Basham; S Bowman; K Brooks; D Brown; S Brown; T Chillingworth; C Churcher; M Collins; R Connor; A Cronin; P Davis; T Feltwell; A Fraser; S Gentles; A Goble; N Hamlin; D Harris; J Hidalgo; G Hodgson; S Holroyd; T Hornsby; S Howarth; E J Huckle; S Hunt; K Jagels; K James; L Jones; M Jones; S Leather; S McDonald; J McLean; P Mooney; S Moule; K Mungall; L Murphy; D Niblett; C Odell; K Oliver; S O'Neil; D Pearson; M A Quail; E Rabbinowitsch; K Rutherford; S Rutter; D Saunders; K Seeger; S Sharp; J Skelton; M Simmonds; R Squares; S Squares; K Stevens; K Taylor; R G Taylor; A Tivey; S Walsh; T Warren; S Whitehead; J Woodward; G Volckaert; R Aert; J Robben; B Grymonprez; I Weltjens; E Vanstreels; M Rieger; M Schäfer; S Müller-Auer; C Gabel; M Fuchs; A Düsterhöft; C Fritzc; E Holzer; D Moestl; H Hilbert; K Borzym; I Langer; A Beck; H Lehrach; R Reinhardt; T M Pohl; P Eger; W Zimmermann; H Wedler; R Wambutt; B Purnelle; A Goffeau; E Cadieu; S Dréano; S Gloux; V Lelaure; S Mottier; F Galibert; S J Aves; Z Xiang; C Hunt; K Moore; S M Hurst; M Lucas; M Rochet; C Gaillardin; V A Tallada; A Garzon; G Thode; R R Daga; L Cruzado; J Jimenez; M Sánchez; F del Rey; J Benito; A Domínguez; J L Revuelta; S Moreno; J Armstrong; S L Forsburg; L Cerutti; T Lowe; W R McCombie; I Paulsen; J Potashkin; G V Shpakovski; D Ussery; B G Barrell; P Nurse; L Cerrutti
Journal:  Nature       Date:  2002-02-21       Impact factor: 49.962

9.  Schizosaccharomyces pombe essential genes: a pilot study.

Authors:  Anabelle Decottignies; Isabel Sanchez-Perez; Paul Nurse
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

10.  A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila.

Authors:  Georg Dietzl; Doris Chen; Frank Schnorrer; Kuan-Chung Su; Yulia Barinova; Michaela Fellner; Beate Gasser; Kaolin Kinsey; Silvia Oppel; Susanne Scheiblauer; Africa Couto; Vincent Marra; Krystyna Keleman; Barry J Dickson
Journal:  Nature       Date:  2007-07-12       Impact factor: 49.962

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  25 in total

1.  Kip3-ing kinetochores clustered.

Authors:  Ryoma Ohi
Journal:  Cell Cycle       Date:  2010-07-01       Impact factor: 4.534

2.  Synchronized fission yeast meiosis using an ATP analog-sensitive Pat1 protein kinase.

Authors:  Lubos Cipak; Silvia Polakova; Randy W Hyppa; Gerald R Smith; Juraj Gregan
Journal:  Nat Protoc       Date:  2014-01-02       Impact factor: 13.491

3.  Determining proteome-wide expression levels using reverse protein arrays in fission yeast.

Authors:  Fanelie Bauer; Akihisa Matsuyama; Minoru Yoshida; Damien Hermand
Journal:  Nat Protoc       Date:  2012-09-13       Impact factor: 13.491

4.  Discovery of genes involved in mitosis, cell division, cell wall integrity and chromosome segregation through construction of Schizosaccharomyces pombe deletion strains.

Authors:  Jun-Song Chen; Janel R Beckley; Liping Ren; Anna Feoktistova; Michael A Jensen; Nicholas Rhind; Kathleen L Gould
Journal:  Yeast       Date:  2016-06-29       Impact factor: 3.239

5.  Generation of a set of conditional analog-sensitive alleles of essential protein kinases in the fission yeast Schizosaccharomyces pombe.

Authors:  Lubos Cipak; Chao Zhang; Ines Kovacikova; Cornelia Rumpf; Eva Miadokova; Kevan M Shokat; Juraj Gregan
Journal:  Cell Cycle       Date:  2011-10-15       Impact factor: 4.534

6.  Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks.

Authors:  Julien F Ayroles; Brooke A Laflamme; Eric A Stone; Mariana F Wolfner; Trudy F C Mackay
Journal:  Genet Res (Camb)       Date:  2011-12       Impact factor: 1.588

7.  Decoupling epigenetic and genetic effects through systematic analysis of gene position.

Authors:  Menzies Chen; Katherine Licon; Rei Otsuka; Lorraine Pillus; Trey Ideker
Journal:  Cell Rep       Date:  2013-01-03       Impact factor: 9.423

8.  Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments.

Authors:  Scott W Simpkins; Raamesh Deshpande; Justin Nelson; Sheena C Li; Jeff S Piotrowski; Henry Neil Ward; Yoko Yashiroda; Hiroyuki Osada; Minoru Yoshida; Charles Boone; Chad L Myers
Journal:  Nat Protoc       Date:  2019-02       Impact factor: 13.491

Review 9.  Applications of comparative evolution to human disease genetics.

Authors:  Claire D McWhite; Benjamin J Liebeskind; Edward M Marcotte
Journal:  Curr Opin Genet Dev       Date:  2015-09-04       Impact factor: 5.578

10.  Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria.

Authors:  Patrick C Thiaville; Basma El Yacoubi; Caroline Köhrer; Jennifer J Thiaville; Chris Deutsch; Dirk Iwata-Reuyl; Jo Marie Bacusmo; Jean Armengaud; Yoshitaka Bessho; Collin Wetzel; Xiaoyu Cao; Patrick A Limbach; Uttam L RajBhandary; Valérie de Crécy-Lagard
Journal:  Mol Microbiol       Date:  2015-10-07       Impact factor: 3.501

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