Literature DB >> 17993536

Niche-specific features of the intestinal bacteroidales.

Michael J Coyne1, Laurie E Comstock.   

Abstract

By analyzing the genomic sequences of 12 Bacteroidales species, we found that all intestinal species have numerous polysaccharide biosynthesis loci, many with promoters that we demonstrate undergo DNA inversion. This feature is not conserved in the Bacteroidales order as a whole, as oral species do not share these genetic features.

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Year:  2007        PMID： 17993536      PMCID： PMC2223690          DOI： 10.1128/JB.01559-07

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  23 in total

1.  EMBOSS: the European Molecular Biology Open Software Suite.

Authors:  P Rice; I Longden; A Bleasby
Journal:  Trends Genet       Date:  2000-06       Impact factor: 11.639

2.  Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure.

Authors:  D P Bayley; E R Rocha; C J Smith
Journal:  FEMS Microbiol Lett       Date:  2000-12-01       Impact factor: 2.742

3.  A genomic view of the human-Bacteroides thetaiotaomicron symbiosis.

Authors:  Jian Xu; Magnus K Bjursell; Jason Himrod; Su Deng; Lynn K Carmichael; Herbert C Chiang; Lora V Hooper; Jeffrey I Gordon
Journal:  Science       Date:  2003-03-28       Impact factor: 47.728

4.  Multiple sequence alignment with the Clustal series of programs.

Authors:  Ramu Chenna; Hideaki Sugawara; Tadashi Koike; Rodrigo Lopez; Toby J Gibson; Desmond G Higgins; Julie D Thompson
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 5.  Genomics of oral bacteria.

Authors:  Margaret J Duncan
Journal:  Crit Rev Oral Biol Med       Date:  2003

6.  Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis.

Authors:  M J Coyne; A O Tzianabos; B C Mallory; V J Carey; D L Kasper; L E Comstock
Journal:  Infect Immun       Date:  2001-07       Impact factor: 3.441

7.  Extensive surface diversity of a commensal microorganism by multiple DNA inversions.

Authors:  C M Krinos; M J Coyne; K G Weinacht; A O Tzianabos; D L Kasper; L E Comstock
Journal:  Nature       Date:  2001-11-29       Impact factor: 49.962

8.  Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells.

Authors:  Thaddeus S Stappenbeck; Lora V Hooper; Jeffrey I Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

9.  Construction and characterization of a nonpigmented mutant of Porphyromonas gingivalis: cell surface polysaccharide as an anchorage for gingipains.

Authors:  Mikio Shoji; Dinath B Ratnayake; Yixin Shi; Tomoko Kadowaki; Kenji Yamamoto; Fuminobu Yoshimura; Akifumi Akamine; Michael A Curtis; Koji Nakayama
Journal:  Microbiology (Reading)       Date:  2002-04       Impact factor: 2.777

10.  Angiogenins: a new class of microbicidal proteins involved in innate immunity.

Authors:  Lora V Hooper; Thaddeus S Stappenbeck; Chieu V Hong; Jeffrey I Gordon
Journal:  Nat Immunol       Date:  2003-01-27       Impact factor: 25.606
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  39 in total

1.  Orientations of the Bacteroides fragilis capsular polysaccharide biosynthesis locus promoters during symbiosis and infection.

Authors:  Erin B Troy; Vincent J Carey; Dennis L Kasper; Laurie E Comstock
Journal:  J Bacteriol       Date:  2010-08-20       Impact factor: 3.490

Review 2.  Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases.

Authors:  Daniel A Peterson; Daniel N Frank; Norman R Pace; Jeffrey I Gordon
Journal:  Cell Host Microbe       Date:  2008-06-12       Impact factor: 21.023

3.  Human symbiont Bacteroides thetaiotaomicron synthesizes 2-keto-3-deoxy-D-glycero-D- galacto-nononic acid (KDN).

Authors:  Liangbing Wang; Zhibing Lu; Karen N Allen; Patrick S Mariano; Debra Dunaway-Mariano
Journal:  Chem Biol       Date:  2008-09-22

Review 4.  An insider's perspective: Bacteroides as a window into the microbiome.

Authors:  Aaron G Wexler; Andrew L Goodman
Journal:  Nat Microbiol       Date:  2017-04-25       Impact factor: 17.745

5.  Acquisition of MACPF domain-encoding genes is the main contributor to LPS glycan diversity in gut Bacteroides species.

Authors:  Valentina Laclare McEneany; Michael J Coyne; Maria Chatzidaki-Livanis; Laurie E Comstock
Journal:  ISME J       Date:  2018-07-31       Impact factor: 10.302

6.  Trans locus inhibitors limit concomitant polysaccharide synthesis in the human gut symbiont Bacteroides fragilis.

Authors:  Maria Chatzidaki-Livanis; Katja G Weinacht; Laurie E Comstock
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

7.  Expression of a uniquely regulated extracellular polysaccharide confers a large-capsule phenotype to Bacteroides fragilis.

Authors:  Maria Chatzidaki-Livanis; Michael J Coyne; Hazeline Roche-Hakansson; Laurie E Comstock
Journal:  J Bacteriol       Date:  2007-11-26       Impact factor: 3.490

8.  A general O-glycosylation system important to the physiology of a major human intestinal symbiont.

Authors:  C Mark Fletcher; Michael J Coyne; Otto F Villa; Maria Chatzidaki-Livanis; Laurie E Comstock
Journal:  Cell       Date:  2009-04-17       Impact factor: 41.582

9.  Identification of the site-specific DNA invertase responsible for the phase variation of SusC/SusD family outer membrane proteins in Bacteroides fragilis.

Authors:  Haruyuki Nakayama-Imaohji; Hideki Hirakawa; Minoru Ichimura; Shin Wakimoto; Satoru Kuhara; Tetsuya Hayashi; Tomomi Kuwahara
Journal:  J Bacteriol       Date:  2009-07-31       Impact factor: 3.490

10.  Coordinate regulation of glycan degradation and polysaccharide capsule biosynthesis by a prominent human gut symbiont.

Authors:  Eric C Martens; Robyn Roth; John E Heuser; Jeffrey I Gordon
Journal:  J Biol Chem       Date:  2009-04-29       Impact factor: 5.157
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