Literature DB >> 12799321

Genomics of oral bacteria.

Margaret J Duncan1.   

Abstract

Advances in bacterial genetics came with the discovery of the genetic code, followed by the development of recombinant DNA technologies. Now the field is undergoing a new revolution because of investigators' ability to sequence and assemble complete bacterial genomes. Over 200 genome projects have been completed or are in progress, and the oral microbiology research community has benefited through projects for oral bacteria and their non-oral-pathogen relatives. This review describes features of several oral bacterial genomes, and emphasizes the themes of species relationships, comparative genomics, and lateral gene transfer. Genomics is having a broad impact on basic research in microbial pathogenesis, and will lead to new approaches in clinical research and therapeutics. The oral microbiota is a unique community especially suited for new challenges to sequence the metagenomes of microbial consortia, and the genomes of uncultivable bacteria.

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Year:  2003        PMID: 12799321     DOI: 10.1177/154411130301400303

Source DB:  PubMed          Journal:  Crit Rev Oral Biol Med        ISSN: 1045-4411


  15 in total

1.  Niche-specific features of the intestinal bacteroidales.

Authors:  Michael J Coyne; Laurie E Comstock
Journal:  J Bacteriol       Date:  2007-11-09       Impact factor: 3.490

2.  Toll-like receptor 2-mediated interleukin-8 expression in gingival epithelial cells by the Tannerella forsythia leucine-rich repeat protein BspA.

Authors:  Shinsuke Onishi; Kiyonobu Honma; Shuang Liang; Panagiota Stathopoulou; Denis Kinane; George Hajishengallis; Ashu Sharma
Journal:  Infect Immun       Date:  2007-10-29       Impact factor: 3.441

3.  Defining essential genes and identifying virulence factors of Porphyromonas gingivalis by massively parallel sequencing of transposon libraries (Tn-seq).

Authors:  Brian A Klein; Margaret J Duncan; Linden T Hu
Journal:  Methods Mol Biol       Date:  2015

4.  Mapping of the nick site on conjugative plasmid pVT745 by interrupted mating.

Authors:  Jinbiao Chen; Donald L Pappas; Dominique M Galli
Journal:  Plasmid       Date:  2010-02-06       Impact factor: 3.466

5.  Conjugal transfer of chromosomal DNA contributes to genetic variation in the oral pathogen Porphyromonas gingivalis.

Authors:  Gena D Tribble; Gwyneth J Lamont; Ann Progulske-Fox; Richard J Lamont
Journal:  J Bacteriol       Date:  2007-06-15       Impact factor: 3.490

6.  Metabolic network model of a human oral pathogen.

Authors:  Varun Mazumdar; Evan S Snitkin; Salomon Amar; Daniel Segrè
Journal:  J Bacteriol       Date:  2008-10-17       Impact factor: 3.490

7.  Genetic and molecular characterization of a dental pathogen using genome-wide approaches.

Authors:  L A Actis; E R Rhodes; A P Tomaras
Journal:  Adv Dent Res       Date:  2003-12

8.  Microviridae goes temperate: microvirus-related proviruses reside in the genomes of Bacteroidetes.

Authors:  Mart Krupovic; Patrick Forterre
Journal:  PLoS One       Date:  2011-05-10       Impact factor: 3.240

9.  The bioinformatics resource for oral pathogens.

Authors:  Tsute Chen; Kevin Abbey; Wen-jie Deng; Meng-chuan Cheng
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species.

Authors:  Radhey S Gupta; Emily Lorenzini
Journal:  BMC Evol Biol       Date:  2007-05-08       Impact factor: 3.260

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