Literature DB >> 28440278

An insider's perspective: Bacteroides as a window into the microbiome.

Aaron G Wexler1,2, Andrew L Goodman1,2.   

Abstract

Over the last decade, our appreciation for the contribution of resident gut microorganisms-the gut microbiota-to human health has surged. However, progress is limited by the sheer diversity and complexity of these microbial communities. Compounding the challenge, the majority of our commensal microorganisms are not close relatives of Escherichia coli or other model organisms and have eluded culturing and manipulation in the laboratory. In this Review, we discuss how over a century of study of the readily cultured, genetically tractable human gut Bacteroides has revealed important insights into the biochemistry, genomics and ecology that make a gut bacterium a gut bacterium. While genome and metagenome sequences are being produced at breakneck speed, the Bacteroides provide a significant 'jump-start' on uncovering the guiding principles that govern microbiota-host and inter-bacterial associations in the gut that will probably extend to many other members of this ecosystem.

Entities:  

Mesh:

Year:  2017        PMID: 28440278      PMCID: PMC5679392          DOI: 10.1038/nmicrobiol.2017.26

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


  140 in total

Review 1.  Eating for two: how metabolism establishes interspecies interactions in the gut.

Authors:  Michael A Fischbach; Justin L Sonnenburg
Journal:  Cell Host Microbe       Date:  2011-10-20       Impact factor: 21.023

2.  Programmable bacteria detect and record an environmental signal in the mammalian gut.

Authors:  Jonathan W Kotula; S Jordan Kerns; Lev A Shaket; Layla Siraj; James J Collins; Jeffrey C Way; Pamela A Silver
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

3.  Measurement of gastrointestinal pH profiles in normal ambulant human subjects.

Authors:  D F Evans; G Pye; R Bramley; A G Clark; T J Dyson; J D Hardcastle
Journal:  Gut       Date:  1988-08       Impact factor: 23.059

4.  Glycan foraging in vivo by an intestine-adapted bacterial symbiont.

Authors:  Justin L Sonnenburg; Jian Xu; Douglas D Leip; Chien-Huan Chen; Benjamin P Westover; Jeremy Weatherford; Jeremy D Buhler; Jeffrey I Gordon
Journal:  Science       Date:  2005-03-25       Impact factor: 47.728

5.  Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota.

Authors:  June L Round; Sarkis K Mazmanian
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

6.  Human symbionts inject and neutralize antibacterial toxins to persist in the gut.

Authors:  Aaron G Wexler; Yiqiao Bao; John C Whitney; Louis-Marie Bobay; Joao B Xavier; Whitman B Schofield; Natasha A Barry; Alistair B Russell; Bao Q Tran; Young Ah Goo; David R Goodlett; Howard Ochman; Joseph D Mougous; Andrew L Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-08       Impact factor: 11.205

Review 7.  Surface area of the digestive tract - revisited.

Authors:  Herbert F Helander; Lars Fändriks
Journal:  Scand J Gastroenterol       Date:  2014-04-02       Impact factor: 2.423

Review 8.  Pathogenic Escherichia coli.

Authors:  James B Kaper; James P Nataro; Harry L Mobley
Journal:  Nat Rev Microbiol       Date:  2004-02       Impact factor: 60.633

9.  Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host.

Authors:  Justin L Sonnenburg; Christina T L Chen; Jeffrey I Gordon
Journal:  PLoS Biol       Date:  2006-11       Impact factor: 8.029

10.  Development of the human infant intestinal microbiota.

Authors:  Chana Palmer; Elisabeth M Bik; Daniel B DiGiulio; David A Relman; Patrick O Brown
Journal:  PLoS Biol       Date:  2007-06-26       Impact factor: 8.029

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  119 in total

1.  Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut.

Authors:  Natalya Yutin; Kira S Makarova; Ayal B Gussow; Mart Krupovic; Anca Segall; Robert A Edwards; Eugene V Koonin
Journal:  Nat Microbiol       Date:  2017-11-13       Impact factor: 17.745

2.  Dynamic changes in gut microbiota under the influence of smoking and TNF-α-blocker in patients with ankylosing spondylitis.

Authors:  Fangze Zhang; Cuili Ma; Bin Zhang; Liqi Bi
Journal:  Clin Rheumatol       Date:  2020-03-26       Impact factor: 2.980

3.  [Effectiveness of Saccharomyces boulardii combined with phototherapy in the treatment of hyperbilirubinemia in neonates: a prospective randomized controlled trial].

Authors:  Wei Tang; Hong-Yan Lu; Qin Sun; Wei-Min Xu
Journal:  Zhongguo Dang Dai Er Ke Za Zhi       Date:  2020-11

4.  Exploring the diversity of mechanosensitive channels in bacterial genomes.

Authors:  Sarah C Johnson; Jordyn Veres; Hannah R Malcolm
Journal:  Eur Biophys J       Date:  2020-11-26       Impact factor: 1.733

Review 5.  The social network of microorganisms - how auxotrophies shape complex communities.

Authors:  Karsten Zengler; Livia S Zaramela
Journal:  Nat Rev Microbiol       Date:  2018-06       Impact factor: 60.633

6.  Islamic fasting leads to an increased abundance of Akkermansia muciniphila and Bacteroides fragilis group: A preliminary study on intermittent fasting.

Authors:  Ceren Özkul; Meltem Yalınay; Tarkan Karakan
Journal:  Turk J Gastroenterol       Date:  2019-12       Impact factor: 1.852

Review 7.  Contribution of the Intestinal Microbiome and Gut Barrier to Hepatic Disorders.

Authors:  Daniel M Chopyk; Arash Grakoui
Journal:  Gastroenterology       Date:  2020-06-20       Impact factor: 22.682

8.  Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis.

Authors:  Eric M Brown; Xiaobo Ke; Daniel Hitchcock; Sarah Jeanfavre; Julian Avila-Pacheco; Toru Nakata; Timothy D Arthur; Nadine Fornelos; Cortney Heim; Eric A Franzosa; Nicki Watson; Curtis Huttenhower; Henry J Haiser; Glen Dillow; Daniel B Graham; B Brett Finlay; Aleksandar D Kostic; Jeffrey A Porter; Hera Vlamakis; Clary B Clish; Ramnik J Xavier
Journal:  Cell Host Microbe       Date:  2019-05-08       Impact factor: 21.023

9.  Multiple mechanisms drive phage infection efficiency in nearly identical hosts.

Authors:  Cristina Howard-Varona; Katherine R Hargreaves; Natalie E Solonenko; Lye Meng Markillie; Richard Allen White; Heather M Brewer; Charles Ansong; Galya Orr; Joshua N Adkins; Matthew B Sullivan
Journal:  ISME J       Date:  2018-03-22       Impact factor: 10.302

Review 10.  The microbiome-shaping roles of bacteriocins.

Authors:  Simon Heilbronner; Bernhard Krismer; Heike Brötz-Oesterhelt; Andreas Peschel
Journal:  Nat Rev Microbiol       Date:  2021-06-01       Impact factor: 60.633

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