Literature DB >> 17951296

The conformational coupling and translocation mechanism of vitamin B12 ATP-binding cassette transporter BtuCD.

Jingwei Weng1, Jianpeng Ma, Kangnian Fan, Wenning Wang.   

Abstract

ATP-binding cassette transporter BtuCD mediating vitamin B(12) uptake in Escherichia coli couples the energy of ATP hydrolysis to the translocation of vitamin B(12) across the membrane into the cell. Elastic normal mode analysis of BtuCD demonstrates that the simultaneous substrate trapping at periplasmic cavity and ATP binding at the ATP-binding cassette (BtuD) dimer proceeds readily along the lowest energy pathway. The transport power stroke is attributed to ATP-hydrolysis-induced opening of the nucleotide-binding domain dimer, which is coupled to conformational rearrangement of transmembrane domain (BtuC) helices leading to the closing at the periplasmic side and opening at the cytoplasmic gate. Simultaneous hydrolysis of two ATP is supported by the fact that antisymmetric movement of BtuD dimer implying alternating hydrolysis cannot induce effective conformational change of the translocation pathway. A plausible mechanism of translocation cycle is proposed in which the possible effect of the association of periplasmic binding protein BtuF to the transporter is also considered.

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Year:  2007        PMID: 17951296      PMCID: PMC2157262          DOI: 10.1529/biophysj.107.110734

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

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Authors:  Y R Yuan; S Blecker; O Martsinkevich; L Millen; P J Thomas; J F Hunt
Journal:  J Biol Chem       Date:  2001-06-11       Impact factor: 5.157

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3.  Crystal structure of the nucleotide-binding domain of the ABC-transporter haemolysin B: identification of a variable region within ABC helical domains.

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4.  An inward-facing conformation of a putative metal-chelate-type ABC transporter.

Authors:  H W Pinkett; A T Lee; P Lum; K P Locher; D C Rees
Journal:  Science       Date:  2006-12-07       Impact factor: 47.728

5.  Simulation of the coupling between nucleotide binding and transmembrane domains in the ATP binding cassette transporter BtuCD.

Authors:  Jacob Sonne; Christian Kandt; Günther H Peters; Flemming Y Hansen; Morten Ø Jensen; D Peter Tieleman
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

6.  The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism.

Authors:  Kaspar P Locher; Allen T Lee; Douglas C Rees
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

7.  Crystal structure of the ATP-binding subunit of an ABC transporter.

Authors:  L W Hung; I X Wang; K Nikaido; P Q Liu; G F Ames; S H Kim
Journal:  Nature       Date:  1998-12-17       Impact factor: 49.962

8.  Crystal structures of the ATPase subunit of the glucose ABC transporter from Sulfolobus solfataricus: nucleotide-free and nucleotide-bound conformations.

Authors:  Grégory Verdon; Sonja V Albers; Bauke W Dijkstra; Arnold J M Driessen; Andy Mark W H Thunnissen
Journal:  J Mol Biol       Date:  2003-07-04       Impact factor: 5.469

9.  Conformational transitions induced by the binding of MgATP to the vitamin B12 ATP-binding cassette (ABC) transporter BtuCD.

Authors:  Eliud O Oloo; D Peter Tieleman
Journal:  J Biol Chem       Date:  2004-08-11       Impact factor: 5.157

10.  ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer.

Authors:  Paul C Smith; Nathan Karpowich; Linda Millen; Jonathan E Moody; Jane Rosen; Philip J Thomas; John F Hunt
Journal:  Mol Cell       Date:  2002-07       Impact factor: 17.970

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  11 in total

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2.  Asymmetric conformational flexibility in the ATP-binding cassette transporter HI1470/1.

Authors:  Jingwei Weng; Jianpeng Ma; Kangnian Fan; Wenning Wang
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

Review 3.  Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.

Authors:  Ivet Bahar; Timothy R Lezon; Ahmet Bakan; Indira H Shrivastava
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4.  Identification of motions in membrane proteins by elastic network models and their experimental validation.

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5.  Capturing Functional Motions of Membrane Channels and Transporters with Molecular Dynamics Simulation.

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Review 6.  Structure, function, and evolution of bacterial ATP-binding cassette systems.

Authors:  Amy L Davidson; Elie Dassa; Cedric Orelle; Jue Chen
Journal:  Microbiol Mol Biol Rev       Date:  2008-06       Impact factor: 11.056

7.  The conformational transition pathways of ATP-binding cassette transporter BtuCD revealed by targeted molecular dynamics simulation.

Authors:  Jingwei Weng; Kangnian Fan; Wenning Wang
Journal:  PLoS One       Date:  2012-01-17       Impact factor: 3.240

8.  The uncoupled ATPase activity of the ABC transporter BtuC2D2 leads to a hysteretic conformational change, conformational memory, and improved activity.

Authors:  Nurit Livnat-Levanon; Amy I Gilson; Nir Ben-Tal; Oded Lewinson
Journal:  Sci Rep       Date:  2016-02-22       Impact factor: 4.379

Review 9.  Structural insights into ABC transporter mechanism.

Authors:  Michael L Oldham; Amy L Davidson; Jue Chen
Journal:  Curr Opin Struct Biol       Date:  2008-11-05       Impact factor: 6.809

10.  Conformational Motions and Functionally Key Residues for Vitamin B12 Transporter BtuCD-BtuF Revealed by Elastic Network Model with a Function-Related Internal Coordinate.

Authors:  Ji-Guo Su; Xiao Zhang; Shu-Xin Zhao; Xing-Yuan Li; Yan-Xue Hou; Yi-Dong Wu; Jian-Zhuo Zhu; Hai-Long An
Journal:  Int J Mol Sci       Date:  2015-08-04       Impact factor: 5.923

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