Literature DB >> 15308647

Conformational transitions induced by the binding of MgATP to the vitamin B12 ATP-binding cassette (ABC) transporter BtuCD.

Eliud O Oloo1, D Peter Tieleman.   

Abstract

ATP-binding cassette transporters use the free energy of ATP hydrolysis to transport structurally diverse molecules across prokaryotic and eukaryotic membranes. Computer simulation studies of the "real-time" dynamics of the ATP binding process in BtuCD, the vitamin B12 importer from Escherichia coli, demonstrate that the docking of ATP to the catalytic pockets progressively draws the two cytoplasmic nucleotide-binding cassettes toward each other. Movement of the cassettes into closer opposition in turn induces conformational rearrangement of alpha-helices in the transmembrane domain. The shape of the translocation pathway consequently changes in a manner that could aid the vectorial movement of vitamin B12. These results suggest that ATP binding may indeed represent the power stroke in the catalytic mechanism. Moreover, occlusion of ATP at one catalytic site is mechanically coupled to opening of the nucleotide-binding pocket at the second site. We propose that this asymmetry in nucleotide binding behavior at the two catalytic pockets may form the structural basis by which the transporter is able to alternate ATP hydrolysis from one site to the other.

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Year:  2004        PMID: 15308647     DOI: 10.1074/jbc.M405084200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

1.  Simulation of the coupling between nucleotide binding and transmembrane domains in the ATP binding cassette transporter BtuCD.

Authors:  Jacob Sonne; Christian Kandt; Günther H Peters; Flemming Y Hansen; Morten Ø Jensen; D Peter Tieleman
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

Review 2.  Protein secretion and membrane insertion systems in gram-negative bacteria.

Authors:  Milton H Saier
Journal:  J Membr Biol       Date:  2007-06-02       Impact factor: 1.843

3.  The conformational coupling and translocation mechanism of vitamin B12 ATP-binding cassette transporter BtuCD.

Authors:  Jingwei Weng; Jianpeng Ma; Kangnian Fan; Wenning Wang
Journal:  Biophys J       Date:  2007-10-19       Impact factor: 4.033

4.  Gating at both ends and breathing in the middle: conformational dynamics of TolC.

Authors:  Loredana Vaccaro; Kathryn A Scott; Mark S P Sansom
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

Review 5.  Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.

Authors:  Ivet Bahar; Timothy R Lezon; Ahmet Bakan; Indira H Shrivastava
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

6.  Molecular-dynamics simulations of the ATP/apo state of a multidrug ATP-binding cassette transporter provide a structural and mechanistic basis for the asymmetric occluded state.

Authors:  Peter M Jones; Anthony M George
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

7.  Directional Force Originating from ATP Hydrolysis Drives the GroEL Conformational Change.

Authors:  Jie Liu; Kannan Sankar; Yuan Wang; Kejue Jia; Robert L Jernigan
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

8.  A bipartite periplasmic receptor-diguanylate cyclase pair (XAC2383-XAC2382) in the bacterium Xanthomonas citri.

Authors:  Raphael D Teixeira; Cristiane R Guzzo; Santiago Justo Arévalo; Maxuel O Andrade; Josielle Abrahão; Robson F de Souza; Chuck S Farah
Journal:  J Biol Chem       Date:  2018-05-04       Impact factor: 5.157

9.  In silico model for P-glycoprotein substrate prediction: insights from molecular dynamics and in vitro studies.

Authors:  Rameshwar Prajapati; Udghosh Singh; Abhijeet Patil; Kailas S Khomane; Pravin Bagul; Arvind K Bansal; Abhay T Sangamwar
Journal:  J Comput Aided Mol Des       Date:  2013-04-24       Impact factor: 3.686

10.  Asymmetric switching in a homodimeric ABC transporter: a simulation study.

Authors:  Jussi Aittoniemi; Heidi de Wet; Frances M Ashcroft; Mark S P Sansom
Journal:  PLoS Comput Biol       Date:  2010-04-29       Impact factor: 4.475

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