Literature DB >> 19785456

Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.

Ivet Bahar1, Timothy R Lezon, Ahmet Bakan, Indira H Shrivastava.   

Abstract

Mesh:

Substances:

Year:  2010        PMID: 19785456      PMCID: PMC2836427          DOI: 10.1021/cr900095e

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


× No keyword cloud information.
  367 in total

1.  Simulation of the coupling between nucleotide binding and transmembrane domains in the ATP binding cassette transporter BtuCD.

Authors:  Jacob Sonne; Christian Kandt; Günther H Peters; Flemming Y Hansen; Morten Ø Jensen; D Peter Tieleman
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

2.  Structural flexibility in proteins: impact of the crystal environment.

Authors:  Konrad Hinsen
Journal:  Bioinformatics       Date:  2007-12-18       Impact factor: 6.937

3.  Coarse-grained biomolecular simulation with REACH: realistic extension algorithm via covariance Hessian.

Authors:  Kei Moritsugu; Jeremy C Smith
Journal:  Biophys J       Date:  2007-08-10       Impact factor: 4.033

4.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

Review 5.  Allosteric receptors after 30 years.

Authors:  J P Changeux; S J Edelstein
Journal:  Neuron       Date:  1998-11       Impact factor: 17.173

Review 6.  EPR approaches to ion channel structure and function.

Authors:  E Perozo; L G Cuello; D M Cortes; Y S Liu; P Sompornpisut
Journal:  Novartis Found Symp       Date:  2002

Review 7.  ABC transporter architecture and mechanism: implications from the crystal structures of BtuCD and BtuF.

Authors:  Kaspar P Locher; Elizabeth Borths
Journal:  FEBS Lett       Date:  2004-04-30       Impact factor: 4.124

8.  The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints.

Authors:  Robert Fredriksson; Malin C Lagerström; Lars-Gustav Lundin; Helgi B Schiöth
Journal:  Mol Pharmacol       Date:  2003-06       Impact factor: 4.436

Review 9.  Molecular dynamics simulations of membrane channels and transporters.

Authors:  Fatemeh Khalili-Araghi; James Gumbart; Po-Chao Wen; Marcos Sotomayor; Emad Tajkhorshid; Klaus Schulten
Journal:  Curr Opin Struct Biol       Date:  2009-04-01       Impact factor: 6.809

10.  Detection and trapping of intermediate states priming nicotinic receptor channel opening.

Authors:  Nuriya Mukhtasimova; Won Yong Lee; Hai-Long Wang; Steven M Sine
Journal:  Nature       Date:  2009-04-01       Impact factor: 49.962

View more
  139 in total

1.  Study, by use of coarse-grained models, of the functionally crucial residues and allosteric pathway of anesthetic regulation of the Gloeobacter violaceus ligand-gated ion channel.

Authors:  Xing Yuan Li; Fang Xie; Jing Chao Zhang; Ji Guo Su
Journal:  Eur Biophys J       Date:  2014-11-04       Impact factor: 1.733

2.  C(alpha)-trace model of the transmembrane domain of human copper transporter 1, motion and functional implications.

Authors:  Maya Schushan; Yariv Barkan; Turkan Haliloglu; Nir Ben-Tal
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

3.  Constraints imposed by the membrane selectively guide the alternating access dynamics of the glutamate transporter GltPh.

Authors:  Timothy R Lezon; Ivet Bahar
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

4.  Independent and cooperative motions of the Kv1.2 channel: voltage sensing and gating.

Authors:  Adva Yeheskel; Turkan Haliloglu; Nir Ben-Tal
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

5.  Flexibility of the exportins Cse1p and Xpot depicted by elastic network model.

Authors:  Mingwen Hu; Byung Kim
Journal:  J Mol Model       Date:  2010-11-07       Impact factor: 1.810

6.  Accurate prediction of the bound form of the Akt pleckstrin homology domain using normal mode analysis to explore structural flexibility.

Authors:  Hoang T Tran; Shuxing Zhang
Journal:  J Chem Inf Model       Date:  2011-08-25       Impact factor: 4.956

7.  The Exact NOE as an Alternative in Ensemble Structure Determination.

Authors:  Beat Vögeli; Simon Olsson; Peter Güntert; Roland Riek
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

8.  Structural insight into the role of thrombospondin-1 binding to calreticulin in calreticulin-induced focal adhesion disassembly.

Authors:  Qi Yan; Joanne E Murphy-Ullrich; Yuhua Song
Journal:  Biochemistry       Date:  2010-05-04       Impact factor: 3.162

9.  Retinal ligand mobility explains internal hydration and reconciles active rhodopsin structures.

Authors:  Nicholas Leioatts; Blake Mertz; Karina Martínez-Mayorga; Tod D Romo; Michael C Pitman; Scott E Feller; Alan Grossfield; Michael F Brown
Journal:  Biochemistry       Date:  2014-01-08       Impact factor: 3.162

10.  Transferrin receptor binds virus capsid with dynamic motion.

Authors:  Hyunwook Lee; Heather M Callaway; Javier O Cifuente; Carol M Bator; Colin R Parrish; Susan L Hafenstein
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-23       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.