Literature DB >> 17940029

The other side of the nearly neutral theory, evidence of slightly advantageous back-mutations.

Jane Charlesworth1, Adam Eyre-Walker.   

Abstract

We argue that if there is a category of slightly deleterious mutations, then there should be a category of slightly advantageous back-mutations. We show that when there are both slightly deleterious and advantageous back-mutations, there is likely to be an increase in the rate of evolution after a population size expansion. This increase in the rate of evolution is short-lived. However, we show how its signature can be captured by comparing the rate of evolution in species that have undergone population size expansion versus contraction. We test our model by comparing the pattern of evolution in pairs of island and mainland species in which the colonization event was either island-to-mainland (population size expansion) or mainland-to-island (contraction). We show that the predicted pattern of evolution is observed.

Mesh:

Year:  2007        PMID: 17940029      PMCID: PMC2040392          DOI: 10.1073/pnas.0705456104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  57 in total

1.  Elevated rates of nonsynonymous substitution in island birds.

Authors:  K P Johnson; J Seger
Journal:  Mol Biol Evol       Date:  2001-05       Impact factor: 16.240

Review 2.  Evolution of synonymous codon usage in metazoans.

Authors:  Laurent Duret
Journal:  Curr Opin Genet Dev       Date:  2002-12       Impact factor: 5.578

3.  Estimating the distribution of fitness effects from DNA sequence data: implications for the molecular clock.

Authors:  Gwenaël Piganeau; Adam Eyre-Walker
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-18       Impact factor: 11.205

4.  Single origin of a pan-Pacific bird group and upstream colonization of Australasia.

Authors:  Christopher E Filardi; Robert G Moyle
Journal:  Nature       Date:  2005-11-10       Impact factor: 49.962

5.  Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds.

Authors:  Sofia Berlin; Hans Ellegren
Journal:  J Mol Evol       Date:  2005-11-30       Impact factor: 2.395

6.  Population size does not influence mitochondrial genetic diversity in animals.

Authors:  Eric Bazin; Sylvain Glémin; Nicolas Galtier
Journal:  Science       Date:  2006-04-28       Impact factor: 47.728

7.  Model of effectively neutral mutations in which selective constraint is incorporated.

Authors:  M Kimura
Journal:  Proc Natl Acad Sci U S A       Date:  1979-07       Impact factor: 11.205

8.  Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.

Authors:  H Akashi
Journal:  Genetics       Date:  1999-01       Impact factor: 4.562

9.  Testing the neutral theory of molecular evolution with genomic data from Drosophila.

Authors:  Justin C Fay; Gerald J Wyckoff; Chung-I Wu
Journal:  Nature       Date:  2002-02-28       Impact factor: 49.962

10.  The genomic rate of adaptive amino acid substitution in Drosophila.

Authors:  Nicolas Bierne; Adam Eyre-Walker
Journal:  Mol Biol Evol       Date:  2004-03-24       Impact factor: 16.240

View more
  41 in total

1.  Genetic linkage and natural selection.

Authors:  N H Barton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

2.  The population genetics of mutations: good, bad and indifferent.

Authors:  Laurence Loewe; William G Hill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

3.  What can we learn about the distribution of fitness effects of new mutations from DNA sequence data?

Authors:  Peter D Keightley; Adam Eyre-Walker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

4.  Mutation rate is linked to diversification in birds.

Authors:  Robert Lanfear; Simon Y W Ho; Dominic Love; Lindell Bromham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-08       Impact factor: 11.205

5.  Determining the factors driving selective effects of new nonsynonymous mutations.

Authors:  Christian D Huber; Bernard Y Kim; Clare D Marsden; Kirk E Lohmueller
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-11       Impact factor: 11.205

Review 6.  Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation.

Authors:  Brian Charlesworth
Journal:  Nat Rev Genet       Date:  2009-03       Impact factor: 53.242

Review 7.  Effective population size and the rate and pattern of nucleotide substitutions.

Authors:  Megan Woolfit
Journal:  Biol Lett       Date:  2009-04-08       Impact factor: 3.703

8.  Synonymous and nonsynonymous polymorphisms versus divergences in bacterial genomes.

Authors:  Austin L Hughes; Robert Friedman; Pierre Rivailler; Jeffrey O French
Journal:  Mol Biol Evol       Date:  2008-07-30       Impact factor: 16.240

Review 9.  Functional primate genomics--leveraging the medical potential.

Authors:  Wolfgang Enard
Journal:  J Mol Med (Berl)       Date:  2012-05-04       Impact factor: 4.599

10.  Divergence and polymorphism under the nearly neutral theory of molecular evolution.

Authors:  John J Welch; Adam Eyre-Walker; David Waxman
Journal:  J Mol Evol       Date:  2008-09-26       Impact factor: 2.395

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.