Literature DB >> 22555407

Functional primate genomics--leveraging the medical potential.

Wolfgang Enard1.   

Abstract

Within biomedicine, comparative genomics is crucial for interpreting human genetic variants and building proper animal models. As our closest relatives, primates are of particular relevance in this frame work. Here, I review principles and concrete examples of this approach. Since one can expect that generating the necessary genomic DNA sequences will not be the major limiting factor in the near future, I argue that in analogy to human biomedicine, comprehensive phenotyping of different primates will be a crucial next step to tap the full potential of comparative genomics. Especially the possibility to generate pluripotent stem cells from primates should allow extending the comparative approach to many medically relevant questions.

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Year:  2012        PMID: 22555407     DOI: 10.1007/s00109-012-0901-4

Source DB:  PubMed          Journal:  J Mol Med (Berl)        ISSN: 0946-2716            Impact factor:   4.599


  106 in total

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2.  Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques.

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Journal:  Genome Res       Date:  2012-02-02       Impact factor: 9.043

3.  A draft sequence of the Neandertal genome.

Authors:  Johannes Krause; Adrian W Briggs; Tomislav Maricic; Udo Stenzel; Martin Kircher; Nick Patterson; Richard E Green; Heng Li; Weiwei Zhai; Markus Hsi-Yang Fritz; Nancy F Hansen; Eric Y Durand; Anna-Sapfo Malaspinas; Jeffrey D Jensen; Tomas Marques-Bonet; Can Alkan; Kay Prüfer; Matthias Meyer; Hernán A Burbano; Jeffrey M Good; Rigo Schultz; Ayinuer Aximu-Petri; Anne Butthof; Barbara Höber; Barbara Höffner; Madlen Siegemund; Antje Weihmann; Chad Nusbaum; Eric S Lander; Carsten Russ; Nathaniel Novod; Jason Affourtit; Michael Egholm; Christine Verna; Pavao Rudan; Dejana Brajkovic; Željko Kucan; Ivan Gušic; Vladimir B Doronichev; Liubov V Golovanova; Carles Lalueza-Fox; Marco de la Rasilla; Javier Fortea; Antonio Rosas; Ralf W Schmitz; Philip L F Johnson; Evan E Eichler; Daniel Falush; Ewan Birney; James C Mullikin; Montgomery Slatkin; Rasmus Nielsen; Janet Kelso; Michael Lachmann; David Reich; Svante Pääbo
Journal:  Science       Date:  2010-05-07       Impact factor: 47.728

4.  Constructing genomic maps of positive selection in humans: where do we go from here?

Authors:  Joshua M Akey
Journal:  Genome Res       Date:  2009-05       Impact factor: 9.043

5.  The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.

Authors:  Matthew Stremlau; Christopher M Owens; Michel J Perron; Michael Kiessling; Patrick Autissier; Joseph Sodroski
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Review 6.  Rapid turnover of functional sequence in human and other genomes.

Authors:  Chris P Ponting; Christoffer Nellåker; Stephen Meader
Journal:  Annu Rev Genomics Hum Genet       Date:  2011       Impact factor: 8.929

7.  Evidence for hitchhiking of deleterious mutations within the human genome.

Authors:  Sung Chun; Justin C Fay
Journal:  PLoS Genet       Date:  2011-08-25       Impact factor: 5.917

8.  A high-resolution map of human evolutionary constraint using 29 mammals.

Authors:  Kerstin Lindblad-Toh; Manuel Garber; Or Zuk; Michael F Lin; Brian J Parker; Stefan Washietl; Pouya Kheradpour; Jason Ernst; Gregory Jordan; Evan Mauceli; Lucas D Ward; Craig B Lowe; Alisha K Holloway; Michele Clamp; Sante Gnerre; Jessica Alföldi; Kathryn Beal; Jean Chang; Hiram Clawson; James Cuff; Federica Di Palma; Stephen Fitzgerald; Paul Flicek; Mitchell Guttman; Melissa J Hubisz; David B Jaffe; Irwin Jungreis; W James Kent; Dennis Kostka; Marcia Lara; Andre L Martins; Tim Massingham; Ida Moltke; Brian J Raney; Matthew D Rasmussen; Jim Robinson; Alexander Stark; Albert J Vilella; Jiayu Wen; Xiaohui Xie; Michael C Zody; Jen Baldwin; Toby Bloom; Chee Whye Chin; Dave Heiman; Robert Nicol; Chad Nusbaum; Sarah Young; Jane Wilkinson; Kim C Worley; Christie L Kovar; Donna M Muzny; Richard A Gibbs; Andrew Cree; Huyen H Dihn; Gerald Fowler; Shalili Jhangiani; Vandita Joshi; Sandra Lee; Lora R Lewis; Lynne V Nazareth; Geoffrey Okwuonu; Jireh Santibanez; Wesley C Warren; Elaine R Mardis; George M Weinstock; Richard K Wilson; Kim Delehaunty; David Dooling; Catrina Fronik; Lucinda Fulton; Bob Fulton; Tina Graves; Patrick Minx; Erica Sodergren; Ewan Birney; Elliott H Margulies; Javier Herrero; Eric D Green; David Haussler; Adam Siepel; Nick Goldman; Katherine S Pollard; Jakob S Pedersen; Eric S Lander; Manolis Kellis
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

9.  The emergence of human-evolutionary medical genomics.

Authors:  Bernard J Crespi
Journal:  Evol Appl       Date:  2010-10-12       Impact factor: 5.183

10.  The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation.

Authors:  Jonathan K Pritchard; Joseph K Pickrell; Graham Coop
Journal:  Curr Biol       Date:  2010-02-23       Impact factor: 10.834

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  7 in total

1.  The evolution of evolutionary molecular medicine: genomics are transforming evolutionary biology into a science with new importance for modern medicine.

Authors:  Detlev Ganten; Randolph Nesse
Journal:  J Mol Med (Berl)       Date:  2012-05       Impact factor: 4.599

Review 2.  On the apparent rarity of epithelial cancers in captive chimpanzees.

Authors:  Nissi M Varki; Ajit Varki
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-07-19       Impact factor: 6.237

Review 3.  APOE in the bullseye of neurodegenerative diseases: impact of the APOE genotype in Alzheimer's disease pathology and brain diseases.

Authors:  Rosalía Fernández-Calle; Sabine C Konings; Javier Frontiñán-Rubio; Juan García-Revilla; Lluís Camprubí-Ferrer; Martina Svensson; Isak Martinson; Antonio Boza-Serrano; José Luís Venero; Henrietta M Nielsen; Gunnar K Gouras; Tomas Deierborg
Journal:  Mol Neurodegener       Date:  2022-09-24       Impact factor: 18.879

4.  Comparative genomics of brain size evolution.

Authors:  Wolfgang Enard
Journal:  Front Hum Neurosci       Date:  2014-05-21       Impact factor: 3.169

5.  Derivation of induced pluripotent stem cells in Japanese macaque (Macaca fuscata).

Authors:  Risako Nakai; Mari Ohnuki; Kota Kuroki; Haruka Ito; Hirohisa Hirai; Ryunosuke Kitajima; Toko Fujimoto; Masato Nakagawa; Wolfgang Enard; Masanori Imamura
Journal:  Sci Rep       Date:  2018-08-15       Impact factor: 4.379

6.  A non-invasive method to generate induced pluripotent stem cells from primate urine.

Authors:  Johanna Geuder; Lucas E Wange; Aleksandar Janjic; Jessica Radmer; Philipp Janssen; Johannes W Bagnoli; Stefan Müller; Artur Kaul; Mari Ohnuki; Wolfgang Enard
Journal:  Sci Rep       Date:  2021-02-10       Impact factor: 4.379

7.  The apolipoprotein E (APOE) gene appears functionally monomorphic in chimpanzees (Pan troglodytes).

Authors:  Annick M McIntosh; Calvin Bennett; Dara Dickson; Stephanie F Anestis; David P Watts; Timothy H Webster; M Babette Fontenot; Brenda J Bradley
Journal:  PLoS One       Date:  2012-10-24       Impact factor: 3.240

  7 in total

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