Literature DB >> 17930725

Influence of polymer-pore interactions on translocation.

Kaifu Luo1, Tapio Ala-Nissila, See-Chen Ying, Aniket Bhattacharya.   

Abstract

We investigate the influence of polymer-pore interactions on the translocation dynamics using Langevin dynamics simulations. An attractive interaction can greatly improve the translocation probability. At the same time, it also increases the translocation time slowly for a weak attraction while an exponential dependence is observed for a strong attraction. For fixed driving force and chain length the histogram of translocation time has a transition from Gaussian distribution to long-tailed distribution with increasing attraction. Under a weak driving force and a strong attractive force, both the translocation time and the residence time in the pore show a nonmonotonic behavior as a function of the chain length. Our simulations results are in good agreement with recent experimental data.

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Year:  2007        PMID: 17930725     DOI: 10.1103/PhysRevLett.99.148102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  15 in total

1.  Polymer translocation through alpha-hemolysin pore with tunable polymer-pore electrostatic interaction.

Authors:  Chiu Tai Andrew Wong; M Muthukumar
Journal:  J Chem Phys       Date:  2010-07-28       Impact factor: 3.488

2.  Temperature Effect on Ionic Current and ssDNA Transport through Nanopores.

Authors:  Linda Payet; Marlène Martinho; Céline Merstorf; Manuela Pastoriza-Gallego; Juan Pelta; Virgile Viasnoff; Loïc Auvray; Murugappan Muthukumar; Jérôme Mathé
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

3.  Mechanism of KCl enhancement in detection of nonionic polymers by nanopore sensors.

Authors:  Claudio G Rodrigues; Dijanah C Machado; Sérgio F Chevtchenko; Oleg V Krasilnikov
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

4.  Effects of nanopore size on the flow-induced star polymer translocation.

Authors:  Qiaoyue Chen; Lili Zhang; Mingming Ding; Xiaozheng Duan; Yineng Huang; Tongfei Shi
Journal:  Eur Phys J E Soft Matter       Date:  2016-11-21       Impact factor: 1.890

5.  Effect of charge patterns along a solid-state nanopore on polyelectrolyte translocation.

Authors:  H H Katkar; M Muthukumar
Journal:  J Chem Phys       Date:  2014-04-07       Impact factor: 3.488

6.  Stochastic resonance during a polymer translocation process.

Authors:  Debasish Mondal; M Muthukumar
Journal:  J Chem Phys       Date:  2016-04-14       Impact factor: 3.488

7.  Ratchet rectification effect on the translocation of a flexible polyelectrolyte chain.

Authors:  Debasish Mondal; M Muthukumar
Journal:  J Chem Phys       Date:  2016-08-28       Impact factor: 3.488

8.  Conformation-dependent translocation of a star polymer through a nanochannel.

Authors:  Zhu Liu; Jiannan Liu; Mengying Xiao; Rong Wang; Yeng-Long Chen
Journal:  Biomicrofluidics       Date:  2014-09-10       Impact factor: 2.800

9.  Polymer translocation in a double-force arrangement.

Authors:  S T T Ollila; K F Luo; T Ala-Nissila; S-C Ying
Journal:  Eur Phys J E Soft Matter       Date:  2009-03-27       Impact factor: 1.890

10.  Long-timescale dynamics and regulation of Sec-facilitated protein translocation.

Authors:  Bin Zhang; Thomas F Miller
Journal:  Cell Rep       Date:  2012-10-19       Impact factor: 9.423

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