Literature DB >> 18805926

Mechanism of KCl enhancement in detection of nonionic polymers by nanopore sensors.

Claudio G Rodrigues1, Dijanah C Machado, Sérgio F Chevtchenko, Oleg V Krasilnikov.   

Abstract

The mechanisms of KCl-induced enhancement in identification of individual molecules of poly(ethylene glycol) using solitary alpha-hemolysin nanoscale pores are described. The interaction of single molecules with the nanopore causes changes in the ionic current flowing through the pore. We show that the on-rate constant of the process is several hundred times larger and that the off-rate is several hundred times smaller in 4 M KCl than in 1 M KCl. These shifts dramatically improve detection and make single molecule identification feasible. KCl also changes the solubility of poly(ethylene glycol) by the same order of magnitude as it changes the rate constants. In addition, the polymer-nanopore interaction is determined to be a strong non-monotonic function of voltage, indicating that the flexible, nonionic poly(ethylene glycol) acts as a charged molecule. Therefore, salting-out and Coulombic interactions are responsible for the KCl-induced enhancement. These results will advance the development of devices with sensor elements based on single nanopores.

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Year:  2008        PMID: 18805926      PMCID: PMC2586564          DOI: 10.1529/biophysj.108.140814

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

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Journal:  Nature       Date:  1999-04-22       Impact factor: 49.962

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3.  A simple method for the determination of the pore radius of ion channels in planar lipid bilayer membranes.

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Journal:  FEMS Microbiol Immunol       Date:  1992-09

4.  Protein electrostriction: a possibility of elastic deformation of the alpha-hemolysin channel by the applied field.

Authors:  Oleg V Krasilnikov; Petr G Merzlyak; Liliya N Yuldasheva; Maria F Capistrano
Journal:  Eur Biophys J       Date:  2005-07-15       Impact factor: 1.733

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Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

6.  The structure of Staphylococcus aureus alpha-toxin-induced ionic channel.

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7.  Partitioning of a polymer into a nanoscopic protein pore obeys a simple scaling law.

Authors:  L Movileanu; H Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-14       Impact factor: 11.205

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Authors:  Stephen Cheley; Li Qun Gu; Hagan Bayley
Journal:  Chem Biol       Date:  2002-07

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis.

Authors:  Matthew Landry; Stephen Winters-Hilt
Journal:  BMC Bioinformatics       Date:  2007-11-01       Impact factor: 3.169

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  29 in total

Review 1.  Applications of biological pores in nanomedicine, sensing, and nanoelectronics.

Authors:  Sheereen Majd; Erik C Yusko; Yazan N Billeh; Michael X Macrae; Jerry Yang; Michael Mayer
Journal:  Curr Opin Biotechnol       Date:  2010-06-18       Impact factor: 9.740

2.  Interactions of a Polypeptide with a Protein Nanopore Under Crowding Conditions.

Authors:  Motahareh Ghahari Larimi; Lauren Ashley Mayse; Liviu Movileanu
Journal:  ACS Nano       Date:  2019-04-03       Impact factor: 15.881

3.  Pressure-controlled motion of single polymers through solid-state nanopores.

Authors:  Bo Lu; David P Hoogerheide; Qing Zhao; Hengbin Zhang; Zhipeng Tang; Dapeng Yu; Jene A Golovchenko
Journal:  Nano Lett       Date:  2013-06-28       Impact factor: 11.189

4.  Alpha-synuclein lipid-dependent membrane binding and translocation through the α-hemolysin channel.

Authors:  Philip A Gurnev; Thai Leong Yap; Candace M Pfefferkorn; Tatiana K Rostovtseva; Alexander M Berezhkovskii; Jennifer C Lee; V Adrian Parsegian; Sergey M Bezrukov
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

5.  Robust properties of membrane-embedded connector channel of bacterial virus phi29 DNA packaging motor.

Authors:  Peng Jing; Farzin Haque; Anne P Vonderheide; Carlo Montemagno; Peixuan Guo
Journal:  Mol Biosyst       Date:  2010-06-04

6.  Polymer partitioning and ion selectivity suggest asymmetrical shape for the membrane pore formed by epsilon toxin.

Authors:  Ekaterina M Nestorovich; Vladimir A Karginov; Sergey M Bezrukov
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

7.  Oriented single directional insertion of nanochannel of bacteriophage SPP1 DNA packaging motor into lipid bilayer via polar hydrophobicity.

Authors:  Zhi Zhou; Zhouxiang Ji; Shaoying Wang; Farzin Haque; Peixuan Guo
Journal:  Biomaterials       Date:  2016-08-04       Impact factor: 12.479

8.  Size-dependent forced PEG partitioning into channels: VDAC, OmpC, and α-hemolysin.

Authors:  M Alphan Aksoyoglu; Rudolf Podgornik; Sergey M Bezrukov; Philip A Gurnev; Murugappan Muthukumar; V Adrian Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-27       Impact factor: 11.205

Review 9.  Studies of RNA Sequence and Structure Using Nanopores.

Authors:  Robert Y Henley; Spencer Carson; Meni Wanunu
Journal:  Prog Mol Biol Transl Sci       Date:  2016       Impact factor: 3.622

10.  Theory of polymer-nanopore interactions refined using molecular dynamics simulations.

Authors:  Arvind Balijepalli; Joseph W F Robertson; Joseph E Reiner; John J Kasianowicz; Richard W Pastor
Journal:  J Am Chem Soc       Date:  2013-04-30       Impact factor: 15.419

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