Literature DB >> 27853961

Effects of nanopore size on the flow-induced star polymer translocation.

Qiaoyue Chen1,2, Lili Zhang2,3, Mingming Ding4, Xiaozheng Duan1, Yineng Huang2,3, Tongfei Shi1.   

Abstract

We study the effects of the nanopore size on the flow-induced capture of the star polymer by a nanopore and the afterward translocation, using a hybrid simulation method that couples point particles into a fluctuating lattice-Boltzmann fluid. Our simulation demonstrates that the optimal forward arm number decreases slowly with the increase of the length of the nanopore. Compared to the minor effect of the length of the nanopore, the optimal forward arm number obviously increases with the increase of the width of the nanopore, which can clarify the current controversial issue for the optimal forward arm number between the theory and experiments. In addition, our results indicate that the critical velocity flux of the star polymer is independent of the nanopore size. Our work bridges the experimental results and the theoretical understanding, which can provide comprehensive insights for the characterization and the purification of the star polymers.

Entities:  

Keywords:  Soft Matter: Polymers and Polyelectrolytes

Year:  2016        PMID: 27853961     DOI: 10.1140/epje/i2016-16109-3

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  13 in total

1.  Dynamics of polymer translocation through nanopores: theory meets experiment.

Authors:  Silvina Matysiak; Alberto Montesi; Matteo Pasquali; Anatoly B Kolomeisky; Cecilia Clementi
Journal:  Phys Rev Lett       Date:  2006-03-22       Impact factor: 9.161

2.  Langevin dynamics simulations of ds-DNA translocation through synthetic nanopores.

Authors:  Christopher Forrey; M Muthukumar
Journal:  J Chem Phys       Date:  2007-07-07       Impact factor: 3.488

3.  Sequence dependence of DNA translocation through a nanopore.

Authors:  Kaifu Luo; Tapio Ala-Nissila; See-Chen Ying; Aniket Bhattacharya
Journal:  Phys Rev Lett       Date:  2008-02-05       Impact factor: 9.161

4.  Nondriven polymer translocation through a nanopore: computational evidence that the escape and relaxation processes are coupled.

Authors:  Michel G Gauthier; Gary W Slater
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-02-11

Review 5.  Modeling the separation of macromolecules: a review of current computer simulation methods.

Authors:  Gary W Slater; Christian Holm; Mykyta V Chubynsky; Hendrick W de Haan; Antoine Dubé; Kai Grass; Owen A Hickey; Christine Kingsburry; David Sean; Tyler N Shendruk; Lixin Zhan
Journal:  Electrophoresis       Date:  2009-03       Impact factor: 3.535

6.  Implicit and explicit solvent models for the simulation of a single polymer chain in solution: Lattice Boltzmann versus Brownian dynamics.

Authors:  Tri T Pham; Ulf D Schiller; J Ravi Prakash; Burkhard Dünweg
Journal:  J Chem Phys       Date:  2009-10-28       Impact factor: 3.488

7.  Molecular dynamics simulation for polymers in the presence of a heat bath.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1986-05

8.  Zero-mode waveguide detection of flow-driven DNA translocation through nanopores.

Authors:  Thomas Auger; Jérôme Mathé; Virgile Viasnoff; Gaëlle Charron; Jean-Marc Di Meglio; Loïc Auvray; Fabien Montel
Journal:  Phys Rev Lett       Date:  2014-07-09       Impact factor: 9.161

9.  Flow-induced polymer translocation through a nanopore from a confining nanotube.

Authors:  Mingming Ding; Qiaoyue Chen; Xiaozheng Duan; Tongfei Shi
Journal:  J Chem Phys       Date:  2016-05-07       Impact factor: 3.488

10.  Flow-induced translocation of star polymers through a nanopore.

Authors:  Mingming Ding; Xiaozheng Duan; Tongfei Shi
Journal:  Soft Matter       Date:  2016-03-21       Impact factor: 3.679

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  1 in total

1.  Single molecule electrophoresis of star polymers through nanopores: Simulations.

Authors:  H H Katkar; M Muthukumar
Journal:  J Chem Phys       Date:  2018-10-28       Impact factor: 3.488

  1 in total

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