Literature DB >> 25332744

Conformation-dependent translocation of a star polymer through a nanochannel.

Zhu Liu1, Jiannan Liu1, Mengying Xiao1, Rong Wang1, Yeng-Long Chen2.   

Abstract

The translocation process of star polymers through a nanochannel is investigated by dissipative particle dynamics simulations. The translocation process is strongly influenced by the star arm arrangement as the polymer enters the channel, and a scaling relation between the translocation time [Formula: see text] and the total number of beads N tot is obtained. Qualitative agreements are found with predictions of the nucleation and growth model for linear block co-polymer translocation. In the intermediate stage where the center of the star polymer is at the channel entrance, the translocation time is found to have power law-dependence on the number of arms outside the channel and very weakly dependent on the number of arms in the channel. Increasing the total number of star arms also increases the star translocation time.

Entities:  

Year:  2014        PMID: 25332744      PMCID: PMC4189700          DOI: 10.1063/1.4893637

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  58 in total

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Journal:  Nano Lett       Date:  2012-02-23       Impact factor: 11.189

2.  Detecting single stranded DNA with a solid state nanopore.

Authors:  Daniel Fologea; Marc Gershow; Bradley Ledden; David S McNabb; Jene A Golovchenko; Jiali Li
Journal:  Nano Lett       Date:  2005-10       Impact factor: 11.189

3.  Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channel.

Authors:  Jérôme Mathé; Aleksei Aksimentiev; David R Nelson; Klaus Schulten; Amit Meller
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-19       Impact factor: 11.205

4.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

5.  Scaling exponents of forced polymer translocation through a nanopore.

Authors:  A Bhattacharya; W H Morrison; K Luo; T Ala-Nissila; S-C Ying; A Milchev; K Binder
Journal:  Eur Phys J E Soft Matter       Date:  2009-08-08       Impact factor: 1.890

6.  Controlling DNA translocation through gate modulation of nanopore wall surface charges.

Authors:  Yuhui He; Makusu Tsutsui; Chun Fan; Masateru Taniguchi; Tomoji Kawai
Journal:  ACS Nano       Date:  2011-06-17       Impact factor: 15.881

7.  The chain sucker: translocation dynamics of a polymer chain into a long narrow channel driven by longitudinal flow.

Authors:  Kaifu Luo; Ralf Metzler
Journal:  J Chem Phys       Date:  2011-04-07       Impact factor: 3.488

8.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

9.  Uptake and translocation mechanisms of cationic amino derivatives functionalized on pristine C60 by lipid membranes: a molecular dynamics simulation study.

Authors:  Sebastian Kraszewski; Mounir Tarek; Christophe Ramseyer
Journal:  ACS Nano       Date:  2011-10-13       Impact factor: 15.881

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

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  1 in total

1.  Single molecule electrophoresis of star polymers through nanopores: Simulations.

Authors:  H H Katkar; M Muthukumar
Journal:  J Chem Phys       Date:  2018-10-28       Impact factor: 3.488

  1 in total

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