Literature DB >> 17930020

Molecular spiders with memory.

Tibor Antal1, P L Krapivsky.   

Abstract

Synthetic biomolecular spiders with "legs" made of single-stranded segments of DNA can move on a surface which is also covered by single-stranded segments of DNA complementary to the leg DNA. In experimental realizations, when a leg detaches from a segment of the surface for the first time it alters that segment, and legs subsequently bind to these altered segments more weakly. Inspired by these experiments, we investigate spiders moving along a one-dimensional substrate, whose legs leave newly visited sites at a slower rate than revisited sites. For a random walk (one-leg spider), the slowdown does not affect the long time behavior. For a bipedal spider, however, the slowdown generates an effective bias toward unvisited sites, and the spider behaves similarly to the excited walk. Surprisingly, the slowing down of the spider at new sites increases the diffusion coefficient and accelerates the growth of the number of visited sites.

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Year:  2007        PMID: 17930020      PMCID: PMC2546873          DOI: 10.1103/PhysRevE.76.021121

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  17 in total

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2.  Phase coexistence in driven one-dimensional transport.

Authors:  A Parmeggiani; T Franosch; E Frey
Journal:  Phys Rev Lett       Date:  2003-02-28       Impact factor: 9.161

3.  Disorder and nonconservation in a driven diffusive system.

Authors:  M R Evans; T Hanney; Y Kafri
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-12-15

4.  "Burnt-bridge" mechanism of molecular motor motion.

Authors:  T Antal; P L Krapivsky
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-10-06

5.  DNA molecular motor driven micromechanical cantilever arrays.

Authors:  Wenmiao Shu; Dongsheng Liu; Moyu Watari; Christian K Riener; Torsten Strunz; Mark E Welland; Shankar Balasubramanian; Rachel A McKendry
Journal:  J Am Chem Soc       Date:  2005-12-07       Impact factor: 15.419

6.  Powering a burnt bridges Brownian ratchet: a model for an extracellular motor driven by proteolysis of collagen.

Authors:  Saveez Saffarian; Hong Qian; Ivan Collier; Elliot Elson; Gregory Goldberg
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-04-10

7.  A model for biased diffusion of collagenase along collagen fibrils.

Authors:  Jun Qian; Ping Xie; Shuo-Xing Dou; Peng-Ye Wang
Journal:  J Theor Biol       Date:  2006-06-10       Impact factor: 2.691

8.  Behavior of polycatalytic assemblies in a substrate-displaying matrix.

Authors:  Renjun Pei; Steven K Taylor; Darko Stefanovic; Sergei Rudchenko; Tiffany E Mitchell; Milan N Stojanovic
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

9.  Solutions of burnt-bridge models for molecular motor transport.

Authors:  Alexander Yu Morozov; Ekaterina Pronina; Anatoly B Kolomeisky; Maxim N Artyomov
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-03-21

10.  Multiple-motor based transport and its regulation by Tau.

Authors:  Michael Vershinin; Brian C Carter; David S Razafsky; Stephen J King; Steven P Gross
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-26       Impact factor: 11.205

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  4 in total

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Journal:  Nat Nanotechnol       Date:  2011-02-06       Impact factor: 39.213

2.  A bird's eye view tracking slow nanometer-scale movements of single molecular nano-assemblies.

Authors:  Nicole Michelotti; Chamaree de Silva; Alexander E Johnson-Buck; Anthony J Manzo; Nils G Walter
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

3.  Molecular robots guided by prescriptive landscapes.

Authors:  Kyle Lund; Anthony J Manzo; Nadine Dabby; Nicole Michelotti; Alexander Johnson-Buck; Jeanette Nangreave; Steven Taylor; Renjun Pei; Milan N Stojanovic; Nils G Walter; Erik Winfree; Hao Yan
Journal:  Nature       Date:  2010-05-13       Impact factor: 49.962

Review 4.  Influenza as a molecular walker.

Authors:  P H Erik Hamming; Nico J Overeem; Jurriaan Huskens
Journal:  Chem Sci       Date:  2019-11-14       Impact factor: 9.825

  4 in total

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