Literature DB >> 17911261

Structure of outer membrane protein G by solution NMR spectroscopy.

Binyong Liang1, Lukas K Tamm.   

Abstract

The bacterial outer membrane protein G (OmpG), a monomeric pH-gated porin, was overexpressed in Escherichia coli and refolded in beta-octyl glucoside micelles. After transfer into dodecylphosphocholine micelles, the solution structure of OmpG was determined by solution NMR spectroscopy at pH 6.3. Complete backbone assignments were obtained for 234 of 280 residues based on CA, CB, and CO connection pathways determined from a series of TROSY-based 3D experiments at 800 MHz. The global fold of the 14-stranded beta-barrel was determined based on 133 long-range NOEs observed between neighboring strands and local chemical shift and NOE information. The structure of the barrel is very similar to previous crystal structures, but the loops of the solution structure are quite flexible.

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Year:  2007        PMID: 17911261      PMCID: PMC2042175          DOI: 10.1073/pnas.0705466104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

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Journal:  Biochemistry       Date:  2000-10-03       Impact factor: 3.162

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Journal:  Nat Struct Biol       Date:  2001-04

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Authors:  Hunter N B Moseley; Gurmukh Sahota; Gaetano T Montelione
Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

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Authors:  G Zhu; X M Kong; K H Sze
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

Review 5.  Shear numbers of protein beta-barrels: definition refinements and statistics.

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Journal:  J Mol Biol       Date:  1998-01-30       Impact factor: 5.469

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Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Solution structure and dynamics of the outer membrane enzyme PagP by NMR.

Authors:  Peter M Hwang; Wing-Yiu Choy; Eileen I Lo; Lu Chen; Julie D Forman-Kay; Christian R H Raetz; Gilbert G Privé; Russell E Bishop; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-30       Impact factor: 11.205

10.  Characterization of the three-dimensional solution structure of human profilin: 1H, 13C, and 15N NMR assignments and global folding pattern.

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Journal:  Biochemistry       Date:  1993-12-21       Impact factor: 3.162

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  57 in total

1.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

2.  Atomistic insights into human Cys-loop receptors by solution NMR.

Authors:  David D Mowrey; Monica N Kinde; Yan Xu; Pei Tang
Journal:  Biochim Biophys Acta       Date:  2014-03-28

3.  Application of 3D NMR for Structure Determination of Peptide Natural Products.

Authors:  Fan Zhang; Navid Adnani; Emmanuel Vazquez-Rivera; Doug R Braun; Marco Tonelli; David R Andes; Tim S Bugni
Journal:  J Org Chem       Date:  2015-08-21       Impact factor: 4.354

4.  NMR-based conformational ensembles explain pH-gated opening and closing of OmpG channel.

Authors:  Tiandi Zhuang; Christina Chisholm; Min Chen; Lukas K Tamm
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

5.  Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

Authors:  Ronald Soong; Pieter E S Smith; Jiadi Xu; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

6.  Structure of functional Staphylococcus aureus alpha-hemolysin channels in tethered bilayer lipid membranes.

Authors:  Duncan J McGillivray; Gintaras Valincius; Frank Heinrich; Joseph W F Robertson; David J Vanderah; Wilma Febo-Ayala; Ilja Ignatjev; Mathias Lösche; John J Kasianowicz
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

7.  Solution NMR resonance assignment strategies for β-barrel membrane proteins.

Authors:  Daniel A Fox; Linda Columbus
Journal:  Protein Sci       Date:  2013-06-27       Impact factor: 6.725

8.  Control of the conductance of engineered protein nanopores through concerted loop motions.

Authors:  Tiandi Zhuang; Lukas K Tamm
Journal:  Angew Chem Int Ed Engl       Date:  2014-04-28       Impact factor: 15.336

9.  NMR characterization of membrane protein-detergent micelle solutions by use of microcoil equipment.

Authors:  Pawel Stanczak; Reto Horst; Pedro Serrano; Kurt Wüthrich
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

10.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

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