Literature DB >> 14872126

Assignment validation software suite for the evaluation and presentation of protein resonance assignment data.

Hunter N B Moseley1, Gurmukh Sahota, Gaetano T Montelione.   

Abstract

We present a set of utilities and graphical user interface (GUI) tools for evaluating the quality of protein resonance assignments. The Assignment Validation Software (AVS) suite, together with new GUI features in the AutoAssign software package, provides a set of reports and graphs for validating protein resonance assignment data before its use in structure analysis and/or submission to the BioMagResBank (BMRB). Input includes a listing of resonance assignments and a summary of sequential connectivity data (i.e. triple resonance, NOE, or other data) used in deriving the assignments. These tools are useful for evaluating the accuracy of protein resonance assignments determined by either automated or manual methods.

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Year:  2004        PMID： 14872126     DOI： 10.1023/B:JNMR.0000015420.44364.06

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN： 0925-2738            Impact factor:   2.835


  21 in total

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9.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

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10.  Solution NMR structure of CD1104B from pathogenic Clostridium difficile reveals a distinct α-helical architecture and provides first structural representative of protein domain family PF14203.

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