Literature DB >> 17889665

A transcription antiterminator constructs a NusA-dependent shield to the emerging transcript.

Smita Shankar1, Asma Hatoum, Jeffrey W Roberts.   

Abstract

The universal bacterial transcription elongation factor NusA mediates elongation activities of RNA polymerase. By itself, NusA induces transcription pausing and facilitates intrinsic termination, but NusA also is a cofactor of antiterminators that antagonize pausing and prevent termination. We show that NusA is required for lambda-related phage 82 antiterminator Q(82) to construct a stable complex in which RNA-based termination mechanisms have restricted access to the emerging transcript; this result suggests a locale for both Q(82) and NusA near the beta flap domain of RNA polymerase. Furthermore, as NusA is not required for the antipausing activity of Q(82) in vitro, we distinguish two distinct activities of antiterminators, namely antipausing and RNA occlusion, and discuss their roles in Q(82) function.

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Year:  2007        PMID: 17889665      PMCID: PMC2075354          DOI: 10.1016/j.molcel.2007.07.025

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  48 in total

1.  Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins.

Authors:  I Toulokhonov; I Artsimovitch; R Landick
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Control of intrinsic transcription termination by N and NusA: the basic mechanisms.

Authors:  I Gusarov; E Nudler
Journal:  Cell       Date:  2001-11-16       Impact factor: 41.582

3.  Crystal structure of the transcription elongation/anti-termination factor NusA from Mycobacterium tuberculosis at 1.7 A resolution.

Authors:  B Gopal; L F Haire; S J Gamblin; E J Dodson; A N Lane; K G Papavinasasundaram; M J Colston; G Dodson
Journal:  J Mol Biol       Date:  2001-12-14       Impact factor: 5.469

4.  Restructuring of an RNA polymerase holoenzyme elongation complex by lambdoid phage Q proteins.

Authors:  M T Marr; S A Datwyler; C F Meares; J W Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

5.  Modification of the properties of elongating RNA polymerase by persistent association with nascent antiterminator RNA.

Authors:  R Sen; R A King; R A Weisberg
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

6.  The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand.

Authors:  Irina Artsimovitch; Robert Landick
Journal:  Cell       Date:  2002-04-19       Impact factor: 41.582

7.  The sigma(70) subunit of RNA polymerase is contacted by the (lambda)Q antiterminator during early elongation.

Authors:  Bryce E Nickels; Christine W Roberts; Haitao Sun; Jeffrey W Roberts; Ann Hochschild
Journal:  Mol Cell       Date:  2002-09       Impact factor: 17.970

8.  E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation.

Authors:  Joo-Seop Park; Michael T Marr; Jeffrey W Roberts
Journal:  Cell       Date:  2002-06-14       Impact factor: 41.582

9.  Molecular requirements for degradation of a modified sense RNA strand by Escherichia coli ribonuclease H1.

Authors:  Daniel R Yazbeck; Kyung-Lyum Min; Masad J Damha
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

Review 10.  Transcription termination and anti-termination in E. coli.

Authors:  Evgeny Nudler; Max E Gottesman
Journal:  Genes Cells       Date:  2002-08       Impact factor: 1.891

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  43 in total

1.  RNA polymerase backtracking in gene regulation and genome instability.

Authors:  Evgeny Nudler
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

2.  Bacterial RNA polymerase can retain σ70 throughout transcription.

Authors:  Timothy T Harden; Christopher D Wells; Larry J Friedman; Robert Landick; Ann Hochschild; Jane Kondev; Jeff Gelles
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-05       Impact factor: 11.205

Review 3.  RNA polymerase between lesion bypass and DNA repair.

Authors:  Alexandra M Deaconescu
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

Review 4.  RNA polymerase elongation factors.

Authors:  Jeffrey W Roberts; Smita Shankar; Joshua J Filter
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

5.  Transcriptional modulator NusA interacts with translesion DNA polymerases in Escherichia coli.

Authors:  Susan E Cohen; Veronica G Godoy; Graham C Walker
Journal:  J Bacteriol       Date:  2008-11-07       Impact factor: 3.490

6.  The interaction surface of a bacterial transcription elongation factor required for complex formation with an antiterminator during transcription antitermination.

Authors:  Saurabh Mishra; Shalini Mohan; Sapna Godavarthi; Ranjan Sen
Journal:  J Biol Chem       Date:  2013-08-02       Impact factor: 5.157

7.  Antisense oligonucleotide-stimulated transcriptional pausing reveals RNA exit channel specificity of RNA polymerase and mechanistic contributions of NusA and RfaH.

Authors:  Kellie E Kolb; Pyae P Hein; Robert Landick
Journal:  J Biol Chem       Date:  2013-11-25       Impact factor: 5.157

8.  The bacteriophage lambda Q antiterminator protein contacts the beta-flap domain of RNA polymerase.

Authors:  Padraig Deighan; Cristina Montero Diez; Mark Leibman; Ann Hochschild; Bryce E Nickels
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-01       Impact factor: 11.205

9.  Distinct pathways of RNA polymerase regulation by a phage-encoded factor.

Authors:  Daria Esyunina; Evgeny Klimuk; Konstantin Severinov; Andrey Kulbachinskiy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

10.  The first bite--profiling the predatosome in the bacterial pathogen Bdellovibrio.

Authors:  Carey Lambert; Chien-Yi Chang; Michael J Capeness; R Elizabeth Sockett
Journal:  PLoS One       Date:  2010-01-06       Impact factor: 3.240

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