Literature DB >> 17873091

CIRCADIAN CLOCK ASSOCIATED1 transcript stability and the entrainment of the circadian clock in Arabidopsis.

Esther Yakir1, Dror Hilman, Miriam Hassidim, Rachel M Green.   

Abstract

The circadian clock is an endogenous mechanism that generates rhythms with an approximately 24-h period and enables plants to predict and adapt to daily and seasonal changes in their environment. These rhythms are generated by molecular oscillators that in Arabidopsis (Arabidopsis thaliana) have been shown to consist of interlocking feedback loops involving a number of elements. An important characteristic of circadian oscillators is that they can be entrained by daily environmental changes in light and temperature. Previous work has shown that one possible entrainment point for the Arabidopsis oscillator is the light-mediated regulation of expression of one of the oscillator genes, CIRCADIAN CLOCK ASSOCIATED1 (CCA1). In this article, we have used transgenic plants with constitutive CCA1 expression to show that light also regulates CCA1 transcript stability. Our experiments show that CCA1 messenger RNA is relatively stable in the dark and in far-red light but has a short half-life in red and blue light. Furthermore, using transgenic plants expressing chimeric CCA1 constructs, we demonstrate that the instability determinants in CCA1 transcripts are probably located in the coding region. We suggest that the combination of light regulation of CCA1 transcription and CCA1 messenger RNA degradation is important for ensuring that the Arabidopsis circadian oscillator is accurately entrained by environmental changes.

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Year:  2007        PMID: 17873091      PMCID: PMC2048808          DOI: 10.1104/pp.107.103812

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  50 in total

1.  Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.

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Review 2.  Messenger RNA turnover in eukaryotes: pathways and enzymes.

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Review 4.  Regulation of output from the plant circadian clock.

Authors:  Esther Yakir; Dror Hilman; Yael Harir; Rachel M Green
Journal:  FEBS J       Date:  2007-01       Impact factor: 5.542

5.  Circadian clock mutants in Arabidopsis identified by luciferase imaging.

Authors:  A J Millar; I A Carré; C A Strayer; N H Chua; S A Kay
Journal:  Science       Date:  1995-02-24       Impact factor: 47.728

6.  DST sequences, highly conserved among plant SAUR genes, target reporter transcripts for rapid decay in tobacco.

Authors:  T C Newman; M Ohme-Takagi; C B Taylor; P J Green
Journal:  Plant Cell       Date:  1993-06       Impact factor: 11.277

7.  Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes.

Authors:  Rodrigo A Gutierrez; Rob M Ewing; J Michael Cherry; Pamela J Green
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-07       Impact factor: 11.205

8.  TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock.

Authors:  Zhaojun Ding; Andrew J Millar; Amanda M Davis; Seth J Davis
Journal:  Plant Cell       Date:  2007-05-11       Impact factor: 11.277

9.  The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana.

Authors:  Mark R Doyle; Seth J Davis; Ruth M Bastow; Harriet G McWatters; László Kozma-Bognár; Ferenc Nagy; Andrew J Millar; Richard M Amasino
Journal:  Nature       Date:  2002-09-05       Impact factor: 49.962

10.  Phototropin 1 is required for high-fluence blue-light-mediated mRNA destabilization.

Authors:  Kevin M Folta; Lon S Kaufman
Journal:  Plant Mol Biol       Date:  2003-03       Impact factor: 4.076

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  26 in total

1.  Heterodimers of the Arabidopsis transcription factors bZIP1 and bZIP53 reprogram amino acid metabolism during low energy stress.

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Journal:  Plant Cell       Date:  2011-01-28       Impact factor: 11.277

Review 2.  Spotlight on post-transcriptional control in the circadian system.

Authors:  Dorothee Staiger; Tino Köster
Journal:  Cell Mol Life Sci       Date:  2010-08-30       Impact factor: 9.261

3.  Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana.

Authors:  Sunghyun Hong; Hae-Ryong Song; Kerry Lutz; Randall A Kerstetter; Todd P Michael; C Robertson McClung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-19       Impact factor: 11.205

Review 4.  Emerging roles for post-transcriptional regulation in circadian clocks.

Authors:  Chunghun Lim; Ravi Allada
Journal:  Nat Neurosci       Date:  2013-10-28       Impact factor: 24.884

Review 5.  Post-transcriptional control of circadian rhythms.

Authors:  Shihoko Kojima; Danielle L Shingle; Carla B Green
Journal:  J Cell Sci       Date:  2011-02-01       Impact factor: 5.285

6.  Stochastic properties of the plant circadian clock.

Authors:  Maria Luisa Guerriero; Alexandra Pokhilko; Aurora Piñas Fernández; Karen J Halliday; Andrew J Millar; Jane Hillston
Journal:  J R Soc Interface       Date:  2011-08-31       Impact factor: 4.118

Review 7.  Global approaches for telling time: omics and the Arabidopsis circadian clock.

Authors:  Brenda Y Chow; Steve A Kay
Journal:  Semin Cell Dev Biol       Date:  2013-02-20       Impact factor: 7.727

8.  Proteasomal regulation of CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) stability is part of the complex control of CCA1.

Authors:  Shlomit Kangisser; Esther Yakir; Rachel M Green
Journal:  Plant Signal Behav       Date:  2013-01-08

9.  Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model.

Authors:  Alexandra Pokhilko; Sarah K Hodge; Kevin Stratford; Kirsten Knox; Kieron D Edwards; Adrian W Thomson; Takeshi Mizuno; Andrew J Millar
Journal:  Mol Syst Biol       Date:  2010-09-21       Impact factor: 11.429

10.  Overexpression of Arabidopsis damaged DNA binding protein 1A (DDB1A) enhances UV tolerance.

Authors:  Wesam M Al Khateeb; Dana F Schroeder
Journal:  Plant Mol Biol       Date:  2009-03-14       Impact factor: 4.076

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