Literature DB >> 20803230

Spotlight on post-transcriptional control in the circadian system.

Dorothee Staiger1, Tino Köster.   

Abstract

An endogenous timing mechanism, the circadian clock, causes rhythmic expression of a considerable fraction of the genome of most organisms to optimally align physiology and behavior with their environment. Circadian clocks are self-sustained oscillators primarily based on transcriptional feedback loops and post-translational modification of clock proteins. It is increasingly becoming clear that regulation at the RNA level strongly impacts the cellular circadian transcriptome and proteome as well as the oscillator mechanism itself. This review focuses on posttranscriptional events, discussing RNA-binding proteins that, by influencing the timing of pre-mRNA splicing, polyadenylation and RNA decay, shape rhythmic expression profiles. Furthermore, recent findings on the contribution of microRNAs to orchestrating circadian rhythms are summarized.

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Year:  2010        PMID: 20803230     DOI: 10.1007/s00018-010-0513-5

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  107 in total

Review 1.  Posttranscriptional and posttranslational regulation of clock genes.

Authors:  Emily Harms; Saul Kivimäe; Michael W Young; Lino Saez
Journal:  J Biol Rhythms       Date:  2004-10       Impact factor: 3.182

Review 2.  Systems biology of mammalian circadian clocks.

Authors:  Hideki Ukai; Hiroki R Ueda
Journal:  Annu Rev Physiol       Date:  2010       Impact factor: 19.318

3.  Diurnal change of the cold-inducible RNA-binding protein (Cirp) expression in mouse brain.

Authors:  H Nishiyama; J H Xue; T Sato; H Fukuyama; N Mizuno; T Houtani; T Sugimoto; J Fujita
Journal:  Biochem Biophys Res Commun       Date:  1998-04-17       Impact factor: 3.575

Review 4.  Role of posttranscriptional regulation in circadian clocks: lessons from Drosophila.

Authors:  I Edery
Journal:  Chronobiol Int       Date:  1999-07       Impact factor: 2.877

5.  Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes.

Authors:  Rodrigo A Gutierrez; Rob M Ewing; J Michael Cherry; Pamela J Green
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-07       Impact factor: 11.205

6.  A genome-wide RNAi screen for modifiers of the circadian clock in human cells.

Authors:  Eric E Zhang; Andrew C Liu; Tsuyoshi Hirota; Loren J Miraglia; Genevieve Welch; Pagkapol Y Pongsawakul; Xianzhong Liu; Ann Atwood; Jon W Huss; Jeff Janes; Andrew I Su; John B Hogenesch; Steve A Kay
Journal:  Cell       Date:  2009-09-17       Impact factor: 41.582

7.  The Drosophila FMRP and LARK RNA-binding proteins function together to regulate eye development and circadian behavior.

Authors:  Oyinkan Sofola; Vasudha Sundram; Fanny Ng; Yelena Kleyner; Joannella Morales; Juan Botas; F Rob Jackson; David L Nelson
Journal:  J Neurosci       Date:  2008-10-08       Impact factor: 6.167

Review 8.  Interlocked feedback loops of the circadian clock of Neurospora crassa.

Authors:  Michael Brunner; Krisztina Káldi
Journal:  Mol Microbiol       Date:  2008-02-26       Impact factor: 3.501

9.  The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop.

Authors:  Jinhu Guo; Ping Cheng; Haiyan Yuan; Yi Liu
Journal:  Cell       Date:  2009-09-10       Impact factor: 41.582

10.  Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana.

Authors:  James C W Locke; László Kozma-Bognár; Peter D Gould; Balázs Fehér; Eva Kevei; Ferenc Nagy; Matthew S Turner; Anthony Hall; Andrew J Millar
Journal:  Mol Syst Biol       Date:  2006-11-14       Impact factor: 11.429

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  26 in total

Review 1.  Clocks not winding down: unravelling circadian networks.

Authors:  Eric E Zhang; Steve A Kay
Journal:  Nat Rev Mol Cell Biol       Date:  2010-11       Impact factor: 94.444

Review 2.  Circadian rhythms and mood regulation: insights from pre-clinical models.

Authors:  Colleen A McClung
Journal:  Eur Neuropsychopharmacol       Date:  2011-08-11       Impact factor: 4.600

Review 3.  Emerging roles for post-transcriptional regulation in circadian clocks.

Authors:  Chunghun Lim; Ravi Allada
Journal:  Nat Neurosci       Date:  2013-10-28       Impact factor: 24.884

Review 4.  Circadian Posttranscriptional Regulatory Mechanisms in Mammals.

Authors:  Carla B Green
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-06-01       Impact factor: 10.005

Review 5.  Alternative splicing at the right time.

Authors:  Sabrina E Sanchez; Ezequiel Petrillo; Alberto R Kornblihtt; Marcelo J Yanovsky
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

Review 6.  Circadian clock-dependent gating in ABA signalling networks.

Authors:  David Seung; Juan Pablo Matte Risopatron; Brian Joseph Jones; Jan Marc
Journal:  Protoplasma       Date:  2011-07-20       Impact factor: 3.356

7.  An Untranslated cis-Element Regulates the Accumulation of Multiple C4 Enzymes in Gynandropsis gynandra Mesophyll Cells.

Authors:  Ben P Williams; Steven J Burgess; Ivan Reyna-Llorens; Jana Knerova; Sylvain Aubry; Susan Stanley; Julian M Hibberd
Journal:  Plant Cell       Date:  2016-01-15       Impact factor: 11.277

Review 8.  Circadian clocks and metabolism.

Authors:  Biliana Marcheva; Kathryn M Ramsey; Clara B Peek; Alison Affinati; Eleonore Maury; Joseph Bass
Journal:  Handb Exp Pharmacol       Date:  2013

9.  Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.

Authors:  Nobuya Koike; Seung-Hee Yoo; Hung-Chung Huang; Vivek Kumar; Choogon Lee; Tae-Kyung Kim; Joseph S Takahashi
Journal:  Science       Date:  2012-08-30       Impact factor: 47.728

Review 10.  Genetics of circadian rhythms in Mammalian model organisms.

Authors:  Phillip L Lowrey; Joseph S Takahashi
Journal:  Adv Genet       Date:  2011       Impact factor: 1.944

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