Literature DB >> 24165681

Emerging roles for post-transcriptional regulation in circadian clocks.

Chunghun Lim1, Ravi Allada.   

Abstract

Circadian clocks temporally organize behavior and physiology across the 24-h day. Great progress has been made in understanding the molecular basis of timekeeping, with a focus on transcriptional feedback networks that are post-translationally modulated. Yet emerging evidence indicates an important role for post-transcriptional regulation, from splicing, polyadenylation and mRNA stability to translation and non-coding functions exemplified by microRNAs. This level of regulation affects virtually all aspects of circadian systems, from the core timing mechanism and input pathways that synchronize clocks to the environment and output pathways that control overt rhythmicity. We hypothesize that post-transcriptional control confers on circadian clocks enhanced robustness as well as the ability to adapt to different environments. As much of what is known derives from nonneural cells or tissues, future work will be required to investigate the role of post-transcriptional regulation in neural clocks.

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Year:  2013        PMID: 24165681     DOI: 10.1038/nn.3543

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  100 in total

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Review 2.  Posttranscriptional and posttranslational regulation of clock genes.

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3.  Comprehensive analysis of microRNA-mRNA co-expression in circadian rhythm.

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4.  A role for the Drosophila fragile X-related gene in circadian output.

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Journal:  Curr Biol       Date:  2002-08-06       Impact factor: 10.834

5.  A new biological rhythm mutant of Drosophila melanogaster that identifies a gene with an essential embryonic function.

Authors:  L M Newby; F R Jackson
Journal:  Genetics       Date:  1993-12       Impact factor: 4.562

6.  Regulation of circadian behavioral output via a MicroRNA-JAK/STAT circuit.

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7.  Circadian rhythm-dependent alterations of gene expression in Drosophila brain lacking fragile X mental retardation protein.

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8.  Expression and rhythmic modulation of circulating microRNAs targeting the clock gene Bmal1 in mice.

Authors:  Vikram R Shende; Marianna M Goldrick; Suchitra Ramani; David J Earnest
Journal:  PLoS One       Date:  2011-07-22       Impact factor: 3.240

9.  Dissecting differential gene expression within the circadian neuronal circuit of Drosophila.

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Journal:  Nat Neurosci       Date:  2009-12-06       Impact factor: 24.884

10.  The circadian clock coordinates ribosome biogenesis.

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  71 in total

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2.  Chromatin landscape and circadian dynamics: Spatial and temporal organization of clock transcription.

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3.  The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms.

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-13       Impact factor: 11.205

4.  A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms.

Authors:  Lili Zhou; Caitlyn Miller; Loren J Miraglia; Angelica Romero; Ludovic S Mure; Satchidananda Panda; Steve A Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-05       Impact factor: 11.205

Review 5.  Circadian Posttranscriptional Regulatory Mechanisms in Mammals.

Authors:  Carla B Green
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-06-01       Impact factor: 10.005

Review 6.  Cardinal Epigenetic Role of non-coding Regulatory RNAs in Circadian Rhythm.

Authors:  Utpal Bhadra; Pradipta Patra; Manika Pal-Bhadra
Journal:  Mol Neurobiol       Date:  2017-05-17       Impact factor: 5.590

7.  Thermosensitive alternative splicing senses and mediates temperature adaptation in Drosophila.

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Journal:  Elife       Date:  2019-11-08       Impact factor: 8.140

8.  High-Amplitude Circadian Rhythms in Drosophila Driven by Calcineurin-Mediated Post-translational Control of sarah.

Authors:  Sin Ho Kweon; Jongbin Lee; Chunghun Lim; Joonho Choe
Journal:  Genetics       Date:  2018-05-03       Impact factor: 4.562

9.  DICER1 is essential for survival of postmitotic rod photoreceptor cells in mice.

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Journal:  FASEB J       Date:  2014-05-08       Impact factor: 5.191

10.  Temperature compensation and temperature sensation in the circadian clock.

Authors:  Philip B Kidd; Michael W Young; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

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