Literature DB >> 17853909

The importance of culturing bacterioplankton in the 'omics' age.

Stephen Giovannoni1, Ulrich Stingl.   

Abstract

Progress in the culturing of microorganisms that are important to ocean ecology has recently accelerated, and technology has been a factor in these advances. However, rather than a single technological breakthrough, a combination of methods now enable microbiologists to screen large numbers of cultures and manipulate cells that are growing at the low biomass densities that are characteristic of those found in seawater. The value of ribosomal RNA databases has been reaffirmed, as they provide nucleic-acid probes for screening to identify important new species in culture. The new cultivation approaches have focused on specific targets that ecological studies suggest are significant for geochemical transformations, such as SAR11. Here, we review how to cultivate marine oligotrophs and why it is worth the effort.

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Year:  2007        PMID: 17853909     DOI: 10.1038/nrmicro1752

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  51 in total

1.  Metaproteogenomic analysis of a community of sponge symbionts.

Authors:  Michael Liu; Lu Fan; Ling Zhong; Staffan Kjelleberg; Torsten Thomas
Journal:  ISME J       Date:  2012-02-02       Impact factor: 10.302

2.  Genome sequence of the Marine Janibacter Sp. Strain HTCC2649.

Authors:  J Cameron Thrash; Jang-Cheon Cho; Anthony D Bertagnolli; Steve Ferriera; Justin Johnson; Kevin L Vergin; Stephen J Giovannoni
Journal:  J Bacteriol       Date:  2010-11-12       Impact factor: 3.490

Review 3.  The microbial ocean from genomes to biomes.

Authors:  Edward F DeLong
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

4.  Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean.

Authors:  Brandon K Swan; Ben Tupper; Alexander Sczyrba; Federico M Lauro; Manuel Martinez-Garcia; José M González; Haiwei Luo; Jody J Wright; Zachary C Landry; Niels W Hanson; Brian P Thompson; Nicole J Poulton; Patrick Schwientek; Silvia G Acinas; Stephen J Giovannoni; Mary Ann Moran; Steven J Hallam; Ricardo Cavicchioli; Tanja Woyke; Ramunas Stepanauskas
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-25       Impact factor: 11.205

Review 5.  Cultivating the uncultured: limits, advances and future challenges.

Authors:  Karine Alain; Joël Querellou
Journal:  Extremophiles       Date:  2009-06-23       Impact factor: 2.395

6.  Marine bacterial, archaeal and protistan association networks reveal ecological linkages.

Authors:  Joshua A Steele; Peter D Countway; Li Xia; Patrick D Vigil; J Michael Beman; Diane Y Kim; Cheryl-Emiliane T Chow; Rohan Sachdeva; Adriane C Jones; Michael S Schwalbach; Julie M Rose; Ian Hewson; Anand Patel; Fengzhu Sun; David A Caron; Jed A Fuhrman
Journal:  ISME J       Date:  2011-03-24       Impact factor: 10.302

7.  Nutrient requirements for growth of the extreme oligotroph 'Candidatus Pelagibacter ubique' HTCC1062 on a defined medium.

Authors:  Paul Carini; Laura Steindler; Sara Beszteri; Stephen J Giovannoni
Journal:  ISME J       Date:  2012-10-25       Impact factor: 10.302

8.  Unravelling ancient microbial history with community proteogenomics and lipid geochemistry.

Authors:  Jochen J Brocks; Jillian Banfield
Journal:  Nat Rev Microbiol       Date:  2009-08       Impact factor: 60.633

9.  Isolation, incubation, and parallel functional testing and identification by FISH of rare microbial single-copy cells from multi-species mixtures using the combination of chemistrode and stochastic confinement.

Authors:  Weishan Liu; Hyun Jung Kim; Elena M Lucchetta; Wenbin Du; Rustem F Ismagilov
Journal:  Lab Chip       Date:  2009-05-14       Impact factor: 6.799

10.  The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation.

Authors:  Qi-Long Qin; Xi-Ying Zhang; Xu-Min Wang; Gui-Ming Liu; Xiu-Lan Chen; Bin-Bin Xie; Hong-Yue Dang; Bai-Cheng Zhou; Jun Yu; Yu-Zhong Zhang
Journal:  BMC Genomics       Date:  2010-04-17       Impact factor: 3.969

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