Literature DB >> 19609261

Unravelling ancient microbial history with community proteogenomics and lipid geochemistry.

Jochen J Brocks1, Jillian Banfield.   

Abstract

Our window into the Earth's ancient microbial past is narrow and obscured by missing data. However, we can glean information about ancient microbial ecosystems using fossil lipids (biomarkers) that are extracted from billion-year-old sedimentary rocks. In this Opinion article, we describe how environmental genomics and related methodologies will give molecular fossil research a boost, by increasing our knowledge about how evolutionary innovations in microorganisms have changed the surface of planet Earth.

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Year:  2009        PMID： 19609261     DOI： 10.1038/nrmicro2167

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


  63 in total

1.  Filamentous microfossils in a 3,235-million-year-old volcanogenic massive sulphide deposit.

Authors:  B Rasmussen
Journal:  Nature       Date:  2000-06-08       Impact factor: 49.962

2.  Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis.

Authors:  V J Orphan; C H House; K U Hinrichs; K D McKeegan; E F DeLong
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

3.  Microbial community gene expression in ocean surface waters.

Authors:  Jorge Frias-Lopez; Yanmei Shi; Gene W Tyson; Maureen L Coleman; Stephan C Schuster; Sallie W Chisholm; Edward F Delong
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-03       Impact factor: 11.205

Review 4.  Systems biology: Functional analysis of natural microbial consortia using community proteomics.

Authors:  Nathan C VerBerkmoes; Vincent J Denef; Robert L Hettich; Jillian F Banfield
Journal:  Nat Rev Microbiol       Date:  2009-03       Impact factor: 60.633

Review 5.  Microbiology in the post-genomic era.

Authors:  Duccio Medini; Davide Serruto; Julian Parkhill; David A Relman; Claudio Donati; Richard Moxon; Stanley Falkow; Rino Rappuoli
Journal:  Nat Rev Microbiol       Date:  2008-05-13       Impact factor: 60.633

6.  Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus.

Authors:  Ann Pearson; Meytal Budin; Jochen J Brocks
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-05       Impact factor: 11.205

7.  The rise of the rhizosolenid diatoms.

Authors:  Jaap S Sinninghe Damsté; Gerard Muyzer; Ben Abbas; Sebastiaan W Rampen; Guillaume Massé; W Guy Allard; Simon T Belt; Jean-Michel Robert; Steven J Rowland; J Michael Moldowan; Silvana M Barbanti; Frederick J Fago; Peter Denisevich; Jeremy Dahl; Luiz A F Trindade; Stefan Schouten
Journal:  Science       Date:  2004-04-23       Impact factor: 47.728

8.  13C-Depleted carbon microparticles in >3700-Ma sea-floor sedimentary rocks from west greenland

Authors: 
Journal:  Science       Date:  1999-01-29       Impact factor: 47.728

9.  Fossil steroids record the appearance of Demospongiae during the Cryogenian period.

Authors:  Gordon D Love; Emmanuelle Grosjean; Charlotte Stalvies; David A Fike; John P Grotzinger; Alexander S Bradley; Amy E Kelly; Maya Bhatia; William Meredith; Colin E Snape; Samuel A Bowring; Daniel J Condon; Roger E Summons
Journal:  Nature       Date:  2009-02-05       Impact factor: 49.962

10.  Community proteomics of a natural microbial biofilm.

Authors:  Rachna J Ram; Nathan C Verberkmoes; Michael P Thelen; Gene W Tyson; Brett J Baker; Robert C Blake; Manesh Shah; Robert L Hettich; Jillian F Banfield
Journal:  Science       Date:  2005-05-05       Impact factor: 47.728
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  8 in total

1.  Spatially resolved genomic, stable isotopic, and lipid analyses of a modern freshwater microbialite from Cuatro Ciénegas, Mexico.

Authors:  Anthony Nitti; Camille A Daniels; Janet Siefert; Valeria Souza; David Hollander; Mya Breitbart
Journal:  Astrobiology       Date:  2012-08-10       Impact factor: 4.335

Review 2.  The hybrid nature of the Eukaryota and a consilient view of life on Earth.

Authors:  James O McInerney; Mary J O'Connell; Davide Pisani
Journal:  Nat Rev Microbiol       Date:  2014-05-12       Impact factor: 60.633

3.  Elucidation of the biosynthetic pathway for Okenone in Thiodictyon sp. CAD16 leads to the discovery of two novel carotene ketolases.

Authors:  Kajetan Vogl; Donald A Bryant
Journal:  J Biol Chem       Date:  2011-09-15       Impact factor: 5.157

Review 4.  What are nuclear receptor ligands?

Authors:  Frances M Sladek
Journal:  Mol Cell Endocrinol       Date:  2010-07-06       Impact factor: 4.102

5.  Vitamin B12-dependent biosynthesis ties amplified 2-methylhopanoid production during oceanic anoxic events to nitrification.

Authors:  Felix J Elling; Jordon D Hemingway; Thomas W Evans; Jenan J Kharbush; Eva Spieck; Roger E Summons; Ann Pearson
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

Review 6.  Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems.

Authors:  Joanne B Emerson; Rachel I Adams; Clarisse M Betancourt Román; Brandon Brooks; David A Coil; Katherine Dahlhausen; Holly H Ganz; Erica M Hartmann; Tiffany Hsu; Nicholas B Justice; Ivan G Paulino-Lima; Julia C Luongo; Despoina S Lymperopoulou; Cinta Gomez-Silvan; Brooke Rothschild-Mancinelli; Melike Balk; Curtis Huttenhower; Andreas Nocker; Parag Vaishampayan; Lynn J Rothschild
Journal:  Microbiome       Date:  2017-08-16       Impact factor: 14.650

7.  Phosphogenesis in the 2460 and 2728 million-year-old banded iron formations as evidence for biological cycling of phosphate in the early biosphere.

Authors:  Yi-Liang Li; Si Sun; Lung S Chan
Journal:  Ecol Evol       Date:  2012-12-10       Impact factor: 2.912

8.  Spatial Variability of Microbial Communities and Salt Distributions Across a Latitudinal Aridity Gradient in the Atacama Desert.

Authors:  Jianxun Shen; Adam J Wyness; Mark W Claire; Aubrey L Zerkle
Journal:  Microb Ecol       Date:  2021-01-13       Impact factor: 4.552
  8 in total

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