Literature DB >> 19444206

The microbial ocean from genomes to biomes.

Edward F DeLong1.   

Abstract

Numerically, microbial species dominate the oceans, yet their population dynamics, metabolic complexity and synergistic interactions remain largely uncharted. A full understanding of life in the ocean requires more than knowledge of marine microbial taxa and their genome sequences. The latest experimental techniques and analytical approaches can provide a fresh perspective on the biological interactions within marine ecosystems, aiding in the construction of predictive models that can interrelate microbial dynamics with the biogeochemical matter and energy fluxes that make up the ocean ecosystem.

Mesh:

Year:  2009        PMID: 19444206     DOI: 10.1038/nature08059

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  71 in total

1.  Proteorhodopsin phototrophy in the ocean.

Authors:  O Béjà; E N Spudich; J L Spudich; M Leclerc; E F DeLong
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

2.  Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

Authors:  Gazalah Sabehi; Ramon Massana; Joseph P Bielawski; Mira Rosenberg; Edward F Delong; Oded Béjà
Journal:  Environ Microbiol       Date:  2003-10       Impact factor: 5.491

3.  Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling.

Authors:  Alexander H Treusch; Sven Leininger; Arnulf Kletzin; Stephan C Schuster; Hans-Peter Klenk; Christa Schleper
Journal:  Environ Microbiol       Date:  2005-12       Impact factor: 5.491

4.  Quantitative phylogenetic assessment of microbial communities in diverse environments.

Authors:  C von Mering; P Hugenholtz; J Raes; S G Tringe; T Doerks; L J Jensen; N Ward; P Bork
Journal:  Science       Date:  2007-02-01       Impact factor: 47.728

5.  Functional metagenomic profiling of nine biomes.

Authors:  Elizabeth A Dinsdale; Robert A Edwards; Dana Hall; Florent Angly; Mya Breitbart; Jennifer M Brulc; Mike Furlan; Christelle Desnues; Matthew Haynes; Linlin Li; Lauren McDaniel; Mary Ann Moran; Karen E Nelson; Christina Nilsson; Robert Olson; John Paul; Beltran Rodriguez Brito; Yijun Ruan; Brandon K Swan; Rick Stevens; David L Valentine; Rebecca Vega Thurber; Linda Wegley; Bryan A White; Forest Rohwer
Journal:  Nature       Date:  2008-03-12       Impact factor: 49.962

6.  Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column.

Authors:  Yanmei Shi; Gene W Tyson; Edward F DeLong
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

7.  Genome dynamics in a natural archaeal population.

Authors:  Eric E Allen; Gene W Tyson; Rachel J Whitaker; John C Detter; Paul M Richardson; Jillian F Banfield
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-31       Impact factor: 11.205

8.  SAR11 marine bacteria require exogenous reduced sulphur for growth.

Authors:  H James Tripp; Joshua B Kitner; Michael S Schwalbach; John W H Dacey; Larry J Wilhelm; Stephen J Giovannoni
Journal:  Nature       Date:  2008-03-12       Impact factor: 49.962

9.  Globally distributed uncultivated oceanic N2-fixing cyanobacteria lack oxygenic photosystem II.

Authors:  Jonathan P Zehr; Shellie R Bench; Brandon J Carter; Ian Hewson; Faheem Niazi; Tuo Shi; H James Tripp; Jason P Affourtit
Journal:  Science       Date:  2008-11-14       Impact factor: 47.728

10.  An application of statistics to comparative metagenomics.

Authors:  Beltran Rodriguez-Brito; Forest Rohwer; Robert A Edwards
Journal:  BMC Bioinformatics       Date:  2006-03-20       Impact factor: 3.169

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  58 in total

1.  Genome sequence of the unclassified marine Gammaproteobacterium BDW918.

Authors:  Suk Min Kim; Sun Ja Cho; Sun Bok Lee
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

Review 2.  Genomics and the future of conservation genetics.

Authors:  Fred W Allendorf; Paul A Hohenlohe; Gordon Luikart
Journal:  Nat Rev Genet       Date:  2010-10       Impact factor: 53.242

3.  From complete genome sequence to 'complete' understanding?

Authors:  Michael Y Galperin; Eugene V Koonin
Journal:  Trends Biotechnol       Date:  2010-08       Impact factor: 19.536

Review 4.  Next-generation sequencing techniques for eukaryotic microorganisms: sequencing-based solutions to biological problems.

Authors:  Minou Nowrousian
Journal:  Eukaryot Cell       Date:  2010-07-02

5.  Effects of Asian dust storms on synechococcus populations in the subtropical Kuroshio Current.

Authors:  Chih-Ching Chung; Jeng Chang; Gwo-Ching Gong; Shih-Chieh Hsu; Kuo-Ping Chiang; Chia-Wen Liao
Journal:  Mar Biotechnol (NY)       Date:  2010-12-14       Impact factor: 3.619

6.  Subpopulation-specific metabolic pathway usage in mixed cultures as revealed by reporter protein-based 13C analysis.

Authors:  Martin Rühl; Wolf-Dietrich Hardt; Uwe Sauer
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

7.  Influence of Wastewater Discharge on the Metabolic Potential of the Microbial Community in River Sediments.

Authors:  Dong Li; Jonathan O Sharp; Jörg E Drewes
Journal:  Microb Ecol       Date:  2015-09-24       Impact factor: 4.552

Review 8.  Microbial Surface Colonization and Biofilm Development in Marine Environments.

Authors:  Hongyue Dang; Charles R Lovell
Journal:  Microbiol Mol Biol Rev       Date:  2015-12-23       Impact factor: 11.056

Review 9.  Stoichiogenomics: the evolutionary ecology of macromolecular elemental composition.

Authors:  James J Elser; Claudia Acquisti; Sudhir Kumar
Journal:  Trends Ecol Evol       Date:  2010-11-18       Impact factor: 17.712

10.  A novel mercuric reductase from the unique deep brine environment of Atlantis II in the Red Sea.

Authors:  Ahmed Sayed; Mohamed A Ghazy; Ari J S Ferreira; João C Setubal; Felipe S Chambergo; Amged Ouf; Mustafa Adel; Adam S Dawe; John A C Archer; Vladimir B Bajic; Rania Siam; Hamza El-Dorry
Journal:  J Biol Chem       Date:  2013-11-26       Impact factor: 5.157

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