Literature DB >> 22669659

Gene knockdown by morpholino-modified oligonucleotides in the zebrafish (Danio rerio) model: applications for developmental toxicology.

Alicia R Timme-Laragy1, Sibel I Karchner, Mark E Hahn.   

Abstract

The zebrafish (Danio rerio) has long been used as a model for developmental biology, making it an excellent model to use also in developmental toxicology. The many advantages of zebrafish include their small size, prolific spawning, rapid development, and transparent embryos. They can be easily manipulated genetically through the use of transgenic technology and gene knockdown via morpholino-modified antisense oligonucleotides (MOs). Knocking down specific genes to assess their role in the response to toxicant exposure provides a way to further our knowledge of how developmental toxicants work on a molecular and mechanistic level while establishing a relationship between these molecular events and morphological, behavioral, and/or physiological effects (i.e., phenotypic anchoring). In this chapter, we address important considerations for using MOs to study developmental toxicology in zebrafish embryos and provide a protocol for their use.

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Year:  2012        PMID: 22669659      PMCID: PMC4218736          DOI: 10.1007/978-1-61779-867-2_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  42 in total

1.  Developmental toxicity of 4-ring polycyclic aromatic hydrocarbons in zebrafish is differentially dependent on AH receptor isoforms and hepatic cytochrome P4501A metabolism.

Authors:  John P Incardona; Heather L Day; Tracy K Collier; Nathaniel L Scholz
Journal:  Toxicol Appl Pharmacol       Date:  2006-10-07       Impact factor: 4.219

2.  Achieving targeted and quantifiable alteration of mRNA splicing with Morpholino oligos.

Authors:  Paul A Morcos
Journal:  Biochem Biophys Res Commun       Date:  2007-05-07       Impact factor: 3.575

3.  Light-controlled gene silencing in zebrafish embryos.

Authors:  Ilya A Shestopalov; Surajit Sinha; James K Chen
Journal:  Nat Chem Biol       Date:  2007-08-23       Impact factor: 15.040

4.  Neuroprotection of MPTP-induced toxicity in zebrafish dopaminergic neurons.

Authors:  Enid T McKinley; Timothy C Baranowski; Delali O Blavo; Candace Cato; Thanh N Doan; Amy L Rubinstein
Journal:  Brain Res Mol Brain Res       Date:  2005-10-04

5.  Identification of zebrafish ARNT1 homologs: 2,3,7,8-tetrachlorodibenzo-p-dioxin toxicity in the developing zebrafish requires ARNT1.

Authors:  Amy L Prasch; Robert L Tanguay; Vatsal Mehta; Warren Heideman; Richard E Peterson
Journal:  Mol Pharmacol       Date:  2005-11-23       Impact factor: 4.436

6.  The role of the aryl hydrocarbon receptor pathway in mediating synergistic developmental toxicity of polycyclic aromatic hydrocarbons to zebrafish.

Authors:  Sonya M Billiard; Alicia R Timme-Laragy; Deena M Wassenberg; Crystal Cockman; Richard T Di Giulio
Journal:  Toxicol Sci       Date:  2006-05-09       Impact factor: 4.849

Review 7.  Unexpected diversity of aryl hydrocarbon receptors in non-mammalian vertebrates: insights from comparative genomics.

Authors:  Mark E Hahn; Sibel I Karchner; Brad R Evans; Diana G Franks; Rebeka R Merson; Joy M Lapseritis
Journal:  J Exp Zool A Comp Exp Biol       Date:  2006-09-01

8.  Duplicate aryl hydrocarbon receptor repressor genes (ahrr1 and ahrr2) in the zebrafish Danio rerio: structure, function, evolution, and AHR-dependent regulation in vivo.

Authors:  Brad R Evans; Sibel I Karchner; Diana G Franks; Mark E Hahn
Journal:  Arch Biochem Biophys       Date:  2005-09-15       Impact factor: 4.013

9.  Role of AHR2 in the expression of novel cytochrome P450 1 family genes, cell cycle genes, and morphological defects in developing zebra fish exposed to 3,3',4,4',5-pentachlorobiphenyl or 2,3,7,8-tetrachlorodibenzo-p-dioxin.

Authors:  Maria E Jönsson; Matthew J Jenny; Bruce R Woodin; Mark E Hahn; John J Stegeman
Journal:  Toxicol Sci       Date:  2007-08-08       Impact factor: 4.849

10.  p53 activation by knockdown technologies.

Authors:  Mara E Robu; Jon D Larson; Aidas Nasevicius; Soraya Beiraghi; Charles Brenner; Steven A Farber; Stephen C Ekker
Journal:  PLoS Genet       Date:  2007-04-10       Impact factor: 5.917

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  15 in total

1.  pouC Regulates Expression of bmp4 During Atrioventricular Canal Formation in Zebrafish.

Authors:  Minoti Bhakta; Mahesh S Padanad; John P Harris; Christina Lubczyk; James F Amatruda; Nikhil V Munshi
Journal:  Dev Dyn       Date:  2018-12-10       Impact factor: 3.780

Review 2.  Translational control of gene function through optically regulated nucleic acids.

Authors:  Kristie E Darrah; Alexander Deiters
Journal:  Chem Soc Rev       Date:  2021-11-29       Impact factor: 54.564

3.  Small Molecule Control of Morpholino Antisense Oligonucleotide Function through Staudinger Reduction.

Authors:  Kristie Darrah; Joshua Wesalo; Bradley Lukasak; Michael Tsang; James K Chen; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2021-10-27       Impact factor: 16.383

4.  Combinatorial control of gene function with wavelength-selective caged morpholinos.

Authors:  Sankha Pattanayak; Luis Angel Vázquez-Maldonado; Alexander Deiters; James K Chen
Journal:  Methods Enzymol       Date:  2019-04-25       Impact factor: 1.600

5.  Glutathione redox dynamics and expression of glutathione-related genes in the developing embryo.

Authors:  Alicia R Timme-Laragy; Jared V Goldstone; Barry R Imhoff; John J Stegeman; Mark E Hahn; Jason M Hansen
Journal:  Free Radic Biol Med       Date:  2013-06-13       Impact factor: 7.376

6.  A Review of the Functional Roles of the Zebrafish Aryl Hydrocarbon Receptors.

Authors:  Prarthana Shankar; Subham Dasgupta; Mark E Hahn; Robyn L Tanguay
Journal:  Toxicol Sci       Date:  2020-12-01       Impact factor: 4.849

7.  Biological effects of 6-formylindolo[3,2-b]carbazole (FICZ) in vivo are enhanced by loss of CYP1A function in an Ahr2-dependent manner.

Authors:  Emma Wincent; Akira Kubota; Alicia Timme-Laragy; Maria E Jönsson; Mark E Hahn; John J Stegeman
Journal:  Biochem Pharmacol       Date:  2016-04-22       Impact factor: 5.858

Review 8.  How Zebrafish Can Drive the Future of Genetic-based Hearing and Balance Research.

Authors:  Lavinia Sheets; Melanie Holmgren; Katie S Kindt
Journal:  J Assoc Res Otolaryngol       Date:  2021-04-28

Review 9.  The Potential of Zebrafish as a Model Organism for Improving the Translation of Genetic Anticancer Nanomedicines.

Authors:  C Gutiérrez-Lovera; A J Vázquez-Ríos; J Guerra-Varela; L Sánchez; M de la Fuente
Journal:  Genes (Basel)       Date:  2017-11-28       Impact factor: 4.096

10.  Utilizing Zebrafish Embryos to Reveal Disruptions in Dorsoventral Patterning.

Authors:  Subham Dasgupta; Vanessa Cheng; David C Volz
Journal:  Curr Protoc       Date:  2021-06
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