Literature DB >> 17701554

Evolution of allosteric models for hemoglobin.

William A Eaton1, Eric R Henry, James Hofrichter, Stefano Bettati, Cristiano Viappiani, Andrea Mozzarelli.   

Abstract

We compare various allosteric models that have been proposed to explain cooperative oxygen binding to hemoglobin, including the two-state allosteric model of Monod, Wyman, and Changeux (MWC), the Cooperon model of Brunori, the model of Szabo and Karplus (SK) based on the stereochemical mechanism of Perutz, the generalization of the SK model by Lee and Karplus (SKL), and the Tertiary Two-State (TTS) model of Henry, Bettati, Hofrichter and Eaton. The preponderance of experimental evidence favors the TTS model which postulates an equilibrium between high (r)- and low (t)-affinity tertiary conformations that are present in both the T and R quaternary structures. Cooperative oxygenation in this model arises from the shift of T to R, as in MWC, but with a significant population of both r and t conformations in the liganded T and in the unliganded R quaternary structures. The TTS model may be considered a combination of the SK and SKL models, and these models provide a framework for a structural interpretation of the TTS parameters. The most compelling evidence in favor of the TTS model is the nanosecond - millisecond carbon monoxide (CO) rebinding kinetics in photodissociation experiments on hemoglobin encapsulated in silica gels. The polymeric network of the gel prevents any tertiary or quaternary conformational changes on the sub-second time scale, thereby permitting the subunit conformations prior to CO photodissociation to be determined from their ligand rebinding kinetics. These experiments show that a large fraction of liganded subunits in the T quaternary structure have the same functional conformation as liganded subunits in the R quaternary structure, an experimental finding inconsistent with the MWC, Cooperon, SK, and SKL models, but readily explained by the TTS model as rebinding to r subunits in T. We propose an additional experiment to test another key prediction of the TTS model, namely that a fraction of subunits in the unliganded R quaternary structure has the same functional conformation (t) as unliganded subunits in the T quaternary structure.

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Year:  2007        PMID: 17701554     DOI: 10.1080/15216540701272380

Source DB:  PubMed          Journal:  IUBMB Life        ISSN: 1521-6543            Impact factor:   3.885


  38 in total

1.  Cooperative macromolecular device revealed by meta-analysis of static and time-resolved structures.

Authors:  Zhong Ren; Vukica Srajer; James E Knapp; William E Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-14       Impact factor: 11.205

Review 2.  Protein Allostery and Conformational Dynamics.

Authors:  Jingjing Guo; Huan-Xiang Zhou
Journal:  Chem Rev       Date:  2016-02-15       Impact factor: 60.622

3.  The relationship between evolutionary and physiological variation in hemoglobin.

Authors:  Ron Milo; Jennifer H Hou; Michael Springer; Michael P Brenner; Marc W Kirschner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

Review 4.  Hemoglobin research and the origins of molecular medicine.

Authors:  Alan N Schechter
Journal:  Blood       Date:  2008-11-15       Impact factor: 22.113

Review 5.  Protein dynamics explain the allosteric behaviors of hemoglobin.

Authors:  Takashi Yonetani; Monique Laberge
Journal:  Biochim Biophys Acta       Date:  2008-05-08

6.  Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering.

Authors:  Marco Cammarata; Matteo Levantino; Friedrich Schotte; Philip A Anfinrud; Friederike Ewald; Jungkweon Choi; Antonio Cupane; Michael Wulff; Hyotcherl Ihee
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

7.  A linkage analysis toolkit for studying allosteric networks in ion channels.

Authors:  Daniel Sigg
Journal:  J Gen Physiol       Date:  2012-12-17       Impact factor: 4.086

8.  Statistical mechanics of Monod-Wyman-Changeux (MWC) models.

Authors:  Sarah Marzen; Hernan G Garcia; Rob Phillips
Journal:  J Mol Biol       Date:  2013-03-14       Impact factor: 5.469

9.  Tertiary and quaternary allostery in tetrameric hemoglobin from Scapharca inaequivalvis.

Authors:  Luca Ronda; Stefano Bettati; Eric R Henry; Tara Kashav; Jeffrey M Sanders; William E Royer; Andrea Mozzarelli
Journal:  Biochemistry       Date:  2013-03-15       Impact factor: 3.162

10.  Dynamics of Quaternary Structure Transitions in R-State Carbonmonoxyhemoglobin Unveiled in Time-Resolved X-ray Scattering Patterns Following a Temperature Jump.

Authors:  Hyun Sun Cho; Friedrich Schotte; Valentyn Stadnytskyi; Anthony DiChiara; Robert Henning; Philip Anfinrud
Journal:  J Phys Chem B       Date:  2018-10-16       Impact factor: 2.991

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