Literature DB >> 17697097

Structure and function of archaeal RNA polymerases.

Finn Werner1.   

Abstract

RNA polymerases (RNAPs) are essential to all life forms and therefore deserve our special attention. The archaeal RNAP is closely related to eukaryotic RNAPII in terms of subunit composition and architecture, promoter elements and basal transcription factors required for the initiation and elongation phase of transcription. RNAPs of this class are large and sophisticated enzymes that interact in a complex manner with DNA/RNA scaffolds, substrates NTPs and a plethora of transcription factors - interactions that often result in an allosteric regulation of RNAP activity. The 12 subunits of RNAP play distinct roles including RNAP assembly and stability, catalysis and functional contacts with exogenous factors. Due to the availability of structural information of RNAPs at high-resolution and wholly recombinant archaeal transcription systems, we are beginning to understand the molecular mechanisms of archaeal RNAPs and transcription in great detail.

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Year:  2007        PMID: 17697097     DOI: 10.1111/j.1365-2958.2007.05876.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  39 in total

Review 1.  Closing the circle: replicating RNA with RNA.

Authors:  Leslie K L Cheng; Peter J Unrau
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-16       Impact factor: 10.005

2.  Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation.

Authors:  Thomas J Santangelo; John N Reeve
Journal:  J Biol Chem       Date:  2010-05-28       Impact factor: 5.157

3.  Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis.

Authors:  Nikolai V Ravin; Andrey V Mardanov; Alexey V Beletsky; Ilya V Kublanov; Tatiana V Kolganova; Alexander V Lebedinsky; Nikolai A Chernyh; Elizaveta A Bonch-Osmolovskaya; Konstantin G Skryabin
Journal:  J Bacteriol       Date:  2008-12-29       Impact factor: 3.490

Review 4.  Evolution of multisubunit RNA polymerases in the three domains of life.

Authors:  Finn Werner; Dina Grohmann
Journal:  Nat Rev Microbiol       Date:  2011-02       Impact factor: 60.633

Review 5.  The interplay between nucleoid organization and transcription in archaeal genomes.

Authors:  Eveline Peeters; Rosalie P C Driessen; Finn Werner; Remus T Dame
Journal:  Nat Rev Microbiol       Date:  2015-05-06       Impact factor: 60.633

Review 6.  Directed polymerase evolution.

Authors:  Tingjian Chen; Floyd E Romesberg
Journal:  FEBS Lett       Date:  2013-11-05       Impact factor: 4.124

7.  Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif.

Authors:  Angela Hirtreiter; Gerke E Damsma; Alan C M Cheung; Daniel Klose; Dina Grohmann; Erika Vojnic; Andrew C R Martin; Patrick Cramer; Finn Werner
Journal:  Nucleic Acids Res       Date:  2010-03-02       Impact factor: 16.971

8.  Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakarensis mutant lacking subunit F is temperature-sensitive.

Authors:  Akira Hirata; Tamotsu Kanai; Thomas J Santangelo; Momoko Tajiri; Kenji Manabe; John N Reeve; Tadayuki Imanaka; Katsuhiko S Murakami
Journal:  Mol Microbiol       Date:  2008-09-10       Impact factor: 3.501

9.  Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea.

Authors:  Fabian Blombach; Kira S Makarova; Jeannette Marrero; Bettina Siebers; Eugene V Koonin; John van der Oost
Journal:  Biol Direct       Date:  2009-10-14       Impact factor: 4.540

10.  Molecular mechanisms of RNA polymerase--the F/E (RPB4/7) complex is required for high processivity in vitro.

Authors:  Angela Hirtreiter; Dina Grohmann; Finn Werner
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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