Literature DB >> 17677681

Subdiffusion and weak ergodicity breaking in the presence of a reactive boundary.

Michael A Lomholt1, Irwin M Zaid, Ralf Metzler.   

Abstract

We derive the boundary condition for a subdiffusive particle interacting with a reactive boundary with a finite reaction rate. Molecular crowding conditions, that are found to cause subdiffusion of larger molecules in biological cells, are shown to effect long-tailed distributions with an identical exponent for both the unbinding times from the boundary to the bulk and the rebinding times from the bulk. This causes a weak ergodicity breaking: typically, an individual particle either stays bound or remains in the bulk for very long times. We discuss why this may be beneficial for in vivo gene regulation by DNA-binding proteins, whose typical concentrations are nanomolar.

Year:  2007        PMID: 17677681     DOI: 10.1103/PhysRevLett.98.200603

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  17 in total

1.  Aging and nonergodicity beyond the Khinchin theorem.

Authors:  S Burov; R Metzler; E Barkai
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-12       Impact factor: 11.205

2.  Sampling the cell with anomalous diffusion - the discovery of slowness.

Authors:  Gernot Guigas; Matthias Weiss
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

3.  Fluorescence recovery after photobleaching: the case of anomalous diffusion.

Authors:  Ariel Lubelski; Joseph Klafter
Journal:  Biophys J       Date:  2008-03-07       Impact factor: 4.033

4.  Facilitated diffusion with DNA coiling.

Authors:  Michael A Lomholt; Bram van den Broek; Svenja-Marei J Kalisch; Gijs J L Wuite; Ralf Metzler
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-06       Impact factor: 11.205

5.  How subdiffusion changes the kinetics of binding to a surface.

Authors:  Irwin M Zaid; Michael A Lomholt; Ralf Metzler
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

6.  Probing microscopic origins of confined subdiffusion by first-passage observables.

Authors:  S Condamin; V Tejedor; R Voituriez; O Bénichou; J Klafter
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

7.  Spatio-temporal correlations can drastically change the response of a MAPK pathway.

Authors:  Koichi Takahashi; Sorin Tanase-Nicola; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-25       Impact factor: 11.205

8.  Atomistic simulation studies of the α/β-glucoside and galactoside in anhydrous bilayers: effect of the anomeric and epimeric configurations.

Authors:  Sara Ahmadi; Vijayan Manickam Achari; Hockseng Nguan; Rauzah Hashim
Journal:  J Mol Model       Date:  2014-03-13       Impact factor: 1.810

9.  Enhancement of tunability of MAPK cascade due to coexistence of processive and distributive phosphorylation mechanisms.

Authors:  Jianqiang Sun; Ming Yi; Lijian Yang; Wenbin Wei; Yiming Ding; Ya Jia
Journal:  Biophys J       Date:  2014-03-04       Impact factor: 4.033

10.  Anomalous diffusion and transport in heterogeneous systems separated by a membrane.

Authors:  E K Lenzi; H V Ribeiro; A A Tateishi; R S Zola; L R Evangelista
Journal:  Proc Math Phys Eng Sci       Date:  2016-11       Impact factor: 2.704

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