Literature DB >> 19651029

How subdiffusion changes the kinetics of binding to a surface.

Irwin M Zaid1, Michael A Lomholt, Ralf Metzler.   

Abstract

Under molecular crowding conditions, biopolymers have been reported to subdiffuse, (r(2)(t)) approximately = t(alpha), with 0 &lt;alpha < 1. Here we study the exchange dynamics of such a subdiffusing particle with a reactive boundary using a continuous time random walk approach. We derive the generalized boundary condition and consider the unbinding from the boundary. An ensuing weak ergodicity breaking has profound consequences for material exchange between the boundary and bulk. We discuss the effects in biological contexts such as gene regulation or membrane-bulk exchange processes. We also suggest various methods to experimentally probe the subdiffusive behavior.

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Year:  2009        PMID: 19651029      PMCID: PMC2718174          DOI: 10.1016/j.bpj.2009.05.022

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  42 in total

1.  Life in a crowded world.

Authors:  Germán Rivas; Frank Ferrone; Judith Herzfeld
Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

2.  Anomalous diffusion probes microstructure dynamics of entangled F-actin networks.

Authors:  I Y Wong; M L Gardel; D R Reichman; Eric R Weeks; M T Valentine; A R Bausch; D A Weitz
Journal:  Phys Rev Lett       Date:  2004-04-29       Impact factor: 9.161

Review 3.  Facilitated target location in biological systems.

Authors:  P H von Hippel; O G Berg
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

Review 4.  Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico.

Authors:  Kouichi Takahashi; Satya Nanda Vel Arjunan; Masaru Tomita
Journal:  FEBS Lett       Date:  2005-03-21       Impact factor: 4.124

5.  Anomalous diffusion of proteins due to molecular crowding.

Authors:  Daniel S Banks; Cécile Fradin
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

6.  The subdiffusive targeting problem.

Authors:  Joel D Eaves; David R Reichman
Journal:  J Phys Chem B       Date:  2008-03-18       Impact factor: 2.991

7.  Nonergodicity mimics inhomogeneity in single particle tracking.

Authors:  Ariel Lubelski; Igor M Sokolov; Joseph Klafter
Journal:  Phys Rev Lett       Date:  2008-06-26       Impact factor: 9.161

8.  Random time-scale invariant diffusion and transport coefficients.

Authors:  Y He; S Burov; R Metzler; E Barkai
Journal:  Phys Rev Lett       Date:  2008-07-28       Impact factor: 9.161

9.  Variety in intracellular diffusion during the cell cycle.

Authors:  Christine Selhuber-Unkel; Pernille Yde; Kirstine Berg-Sørensen; Lene B Oddershede
Journal:  Phys Biol       Date:  2009-07-01       Impact factor: 2.583

10.  Spatial effects on the speed and reliability of protein-DNA search.

Authors:  Zeba Wunderlich; Leonid A Mirny
Journal:  Nucleic Acids Res       Date:  2008-05-03       Impact factor: 16.971

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  3 in total

1.  Anomalous diffusion and transport in heterogeneous systems separated by a membrane.

Authors:  E K Lenzi; H V Ribeiro; A A Tateishi; R S Zola; L R Evangelista
Journal:  Proc Math Phys Eng Sci       Date:  2016-11       Impact factor: 2.704

2.  Transient Anomalous Diffusion MRI in Excised Mouse Spinal Cord: Comparison Among Different Diffusion Metrics and Validation With Histology.

Authors:  Alessandra Caporale; Giovanni Battista Bonomo; Giulio Tani Raffaelli; Ada Maria Tata; Bice Avallone; Felix Werner Wehrli; Silvia Capuani
Journal:  Front Neurosci       Date:  2022-02-15       Impact factor: 4.677

3.  Two-photon time-lapse microscopy of BODIPY-cholesterol reveals anomalous sterol diffusion in chinese hamster ovary cells.

Authors:  Frederik W Lund; Michael A Lomholt; Lukasz M Solanko; Robert Bittman; Daniel Wüstner
Journal:  BMC Biophys       Date:  2012-10-18       Impact factor: 4.778

  3 in total

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