Literature DB >> 17677305

Polymer translocation through a nanopore under a pulling force.

Ilkka Huopaniemi1, Kaifu Luo, Tapio Ala-Nissila, See-Chen Ying.   

Abstract

We investigate polymer translocation through a nanopore under a pulling force using Langevin dynamics simulations. We concentrate on the influence of the chain length N and the pulling force F on the translocation time tau . The distribution of tau is symmetric and narrow for strong F . We find that tau approximately N{2} and translocation velocity v approximately N{-1} for both moderate and strong F . For infinitely wide pores, three regimes are observed for tau as a function of F . With increasing F , tau is independent of F for weak F , and then tau approximately F{-2+nu{-1}} for moderate F, where nu is the Flory exponent, which finally crosses over to tau approximately F{-1} for strong force. For narrow pores, even for moderate force tau approximately F{-1}. Finally, the waiting time, for monomer s and monomer s+1 to exit the pore, has a maximum for s close to the end of the chain, in contrast to the case where the polymer is driven by an external force within the pore.

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Year:  2007        PMID: 17677305     DOI: 10.1103/PhysRevE.75.061912

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  5 in total

1.  Cooperative translocation dynamics of biopolymer chains through nanopores in a membrane: Slow dynamics limit.

Authors:  Hai-Jun Wang; Fang Gu; Xiao-Zhong Hong; Xin-Wu Ba
Journal:  Eur Phys J E Soft Matter       Date:  2010-10-31       Impact factor: 1.890

2.  Passage times for polymer translocation pulled through a narrow pore.

Authors:  Debabrata Panja; Gerard T Barkema
Journal:  Biophys J       Date:  2007-10-19       Impact factor: 4.033

3.  Conformation and dynamics of model polymer in connected chamber-pore system.

Authors:  Erica J Saltzman; Murugappan Muthukumar
Journal:  J Chem Phys       Date:  2009-12-07       Impact factor: 3.488

4.  Conformation-dependent translocation of a star polymer through a nanochannel.

Authors:  Zhu Liu; Jiannan Liu; Mengying Xiao; Rong Wang; Yeng-Long Chen
Journal:  Biomicrofluidics       Date:  2014-09-10       Impact factor: 2.800

5.  Polymer translocation in a double-force arrangement.

Authors:  S T T Ollila; K F Luo; T Ala-Nissila; S-C Ying
Journal:  Eur Phys J E Soft Matter       Date:  2009-03-27       Impact factor: 1.890

  5 in total

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