Literature DB >> 17666096

Understanding diseases by mouse click: the promise and potential of computational approaches in Systems Biology.

F Klauschen1, B R Angermann, M Meier-Schellersheim.   

Abstract

Computational modelling approaches can nowadays build large-scale simulations of cellular behaviour based on data describing detailed molecular level interactions, thus performing the space- and time-scale integrations that would be impossible just by intuition. Recent progress in the development of both experimental methods and computational tools has provided the means to generate the necessary quantitative data and has made computational methods accessible even to non-theorists, thereby removing a major hurdle that has in the past made many experimentalists hesitate to invest serious effort in formulating quantitative models. We describe how computational biology differs from classical bioinformatics, how it emerged from mathematical biology and elucidate the role it plays for the integration of traditionally separated areas of biomedical research within the larger framework of Systems Biology.

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Year:  2007        PMID: 17666096      PMCID: PMC2219318          DOI: 10.1111/j.1365-2249.2007.03472.x

Source DB:  PubMed          Journal:  Clin Exp Immunol        ISSN: 0009-9104            Impact factor:   4.330


  41 in total

1.  Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.

Authors:  S Brenner; M Johnson; J Bridgham; G Golda; D H Lloyd; D Johnson; S Luo; S McCurdy; M Foy; M Ewan; R Roth; D George; S Eletr; G Albrecht; E Vermaas; S R Williams; K Moon; T Burcham; M Pallas; R B DuBridge; J Kirchner; K Fearon; J Mao; K Corcoran
Journal:  Nat Biotechnol       Date:  2000-06       Impact factor: 54.908

Review 2.  A new approach to decoding life: systems biology.

Authors:  T Ideker; T Galitski; L Hood
Journal:  Annu Rev Genomics Hum Genet       Date:  2001       Impact factor: 8.929

Review 3.  The art of the probable: system control in the adaptive immune system.

Authors:  R N Germain
Journal:  Science       Date:  2001-07-13       Impact factor: 47.728

4.  The ERATO Systems Biology Workbench: enabling interaction and exchange between software tools for computational biology.

Authors:  M Hucka; A Finney; H M Sauro; H Bolouri; J Doyle; H Kitano
Journal:  Pac Symp Biocomput       Date:  2002

Review 5.  Computational systems biology.

Authors:  Hiroaki Kitano
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

Review 6.  Quantitative cell biology with the Virtual Cell.

Authors:  Boris M Slepchenko; James C Schaff; Ian Macara; Leslie M Loew
Journal:  Trends Cell Biol       Date:  2003-11       Impact factor: 20.808

Review 7.  The complexity of complexes in signal transduction.

Authors:  William S Hlavacek; James R Faeder; Michael L Blinov; Alan S Perelson; Byron Goldstein
Journal:  Biotechnol Bioeng       Date:  2003-12-30       Impact factor: 4.530

Review 8.  The Type 1 Diabetes Genetics Consortium.

Authors:  Stephen S Rich; Patrick Concannon; Henry Erlich; Cecile Julier; Grant Morahan; Jorn Nerup; Flemming Pociot; John A Todd
Journal:  Ann N Y Acad Sci       Date:  2006-10       Impact factor: 5.691

9.  TCR ligand discrimination is enforced by competing ERK positive and SHP-1 negative feedback pathways.

Authors:  Irena Stefanová; Bernhard Hemmer; Marco Vergelli; Roland Martin; William E Biddison; Ronald N Germain
Journal:  Nat Immunol       Date:  2003-02-10       Impact factor: 25.606

Review 10.  Type 1A diabetes mellitus-associated autoimmunity.

Authors:  Edwin Liu; George S Eisenbarth
Journal:  Endocrinol Metab Clin North Am       Date:  2002-06       Impact factor: 4.741

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  4 in total

1.  Unraveling human complexity and disease with systems biology and personalized medicine.

Authors:  Stephen Naylor; Jake Y Chen
Journal:  Per Med       Date:  2010-05       Impact factor: 2.512

Review 2.  Networks and pathways in pigmentation, health, and disease.

Authors:  Laura L Baxter; Stacie K Loftus; William J Pavan
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Nov-Dec

3.  Baseline MRI predictors of conversion from MCI to probable AD in the ADNI cohort.

Authors:  Shannon L Risacher; Andrew J Saykin; John D West; Li Shen; Hiram A Firpi; Brenna C McDonald
Journal:  Curr Alzheimer Res       Date:  2009-08       Impact factor: 3.498

4.  Global report on preterm birth and stillbirth (2 of 7): discovery science.

Authors:  Michael G Gravett; Craig E Rubens; Toni M Nunes
Journal:  BMC Pregnancy Childbirth       Date:  2010-02-23       Impact factor: 3.007

  4 in total

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