Literature DB >> 20577569

Unraveling human complexity and disease with systems biology and personalized medicine.

Stephen Naylor1, Jake Y Chen.   

Abstract

We are all perplexed that current medical practice often appears maladroit in curing our individual illnesses or disease. However, as is often the case, a lack of understanding, tools and technologies are the root cause of such situations. Human individuality is an often-quoted term but, in the context of human biology, it is poorly understood. This is compounded when there is a need to consider the variability of human populations. In the case of the former, it is possible to quantify human complexity as determined by the 35,000 genes of the human genome, the 1-10 million proteins (including antibodies) and the 2000-3000 metabolites of the human metabolome. Human variability is much more difficult to assess, since many of the variables, such as the definition of race, are not even clearly agreed on. In order to accommodate human complexity, variability and its influence on health and disease, it is necessary to undertake a systematic approach. In the past decade, the emergence of analytical platforms and bioinformatics tools has led to the development of systems biology. Such an approach offers enormous potential in defining key pathways and networks involved in optimal human health, as well as disease onset, progression and treatment. The tools and technologies now available in systems biology analyses offer exciting opportunities to exploit the emerging areas of personalized medicine. In this article, we discuss the current status of human complexity, and how systems biology and personalized medicine can impact at the individual and population level.

Entities:  

Year:  2010        PMID: 20577569      PMCID: PMC2888109          DOI: 10.2217/pme.10.16

Source DB:  PubMed          Journal:  Per Med        ISSN: 1741-0541            Impact factor:   2.512


  66 in total

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Journal:  Isr Med Assoc J       Date:  2002-08       Impact factor: 0.892

2.  A vision for the future of genomics research.

Authors:  Francis S Collins; Eric D Green; Alan E Guttmacher; Mark S Guyer
Journal:  Nature       Date:  2003-04-14       Impact factor: 49.962

3.  Systems biology and new technologies enable predictive and preventative medicine.

Authors:  Leroy Hood; James R Heath; Michael E Phelps; Biaoyang Lin
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

4.  Methods for the differential integrative omic analysis of plasma from a transgenic disease animal model.

Authors:  Eugene Davidov; Clary B Clish; Matej Oresic; Michael Meys; Wayne Stochaj; Philip Snell; Gary Lavine; Thomas R Londo; Aram Adourian; Xiang Zhang; Mark Johnston; Nicole Morel; Edward W Marple; Thomas N Plasterer; Eric Neumann; Elwin Verheij; Jack T W E Vogels; Louis M Havekes; Jan van der Greef; Stephen Naylor
Journal:  OMICS       Date:  2004

Review 5.  Standards for systems biology.

Authors:  Alvis Brazma; Maria Krestyaninova; Ugis Sarkans
Journal:  Nat Rev Genet       Date:  2006-08       Impact factor: 53.242

Review 6.  Understanding diseases by mouse click: the promise and potential of computational approaches in Systems Biology.

Authors:  F Klauschen; B R Angermann; M Meier-Schellersheim
Journal:  Clin Exp Immunol       Date:  2007-07-30       Impact factor: 4.330

Review 7.  Tools for visually exploring biological networks.

Authors:  Matthew Suderman; Michael Hallett
Journal:  Bioinformatics       Date:  2007-08-25       Impact factor: 6.937

Review 8.  Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Proteomics approaches to the systems biology of cardiovascular diseases.

Authors:  Thomas A Drake; Peipei Ping
Journal:  J Lipid Res       Date:  2006-10-25       Impact factor: 5.922

Review 9.  The nature of systems biology.

Authors:  Frank J Bruggeman; Hans V Westerhoff
Journal:  Trends Microbiol       Date:  2006-11-20       Impact factor: 17.079

10.  Global systems biology, personalized medicine and molecular epidemiology.

Authors:  Jeremy K Nicholson
Journal:  Mol Syst Biol       Date:  2006-10-03       Impact factor: 11.429

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  12 in total

1.  Proteomic Characterization Reveals That MMP-3 Correlates With Bronchiolitis Obliterans Syndrome Following Allogeneic Hematopoietic Cell and Lung Transplantation.

Authors:  X Liu; Z Yue; J Yu; E Daguindau; K Kushekhar; Q Zhang; Y Ogata; P R Gafken; Y Inamoto; A Gracon; D S Wilkes; J A Hansen; S J Lee; J Y Chen; S Paczesny
Journal:  Am J Transplant       Date:  2016-03-14       Impact factor: 8.086

2.  Mortality Risk Prediction: Can Comorbidity Indices Be Improved With Psychosocial Data?

Authors:  Benjamin P Chapman; Alexander Weiss; Kevin Fiscella; Peter Muennig; Ichiro Kawachi; Paul Duberstein
Journal:  Med Care       Date:  2015-11       Impact factor: 2.983

3.  An integrative network analysis framework for identifying molecular functions in complex disorders examining major depressive disorder as a test case.

Authors:  Anup Mammen Oommen; Stephen Cunningham; Páraic S O'Súilleabháin; Brian M Hughes; Lokesh Joshi
Journal:  Sci Rep       Date:  2021-05-06       Impact factor: 4.379

4.  Discovery of pathway biomarkers from coupled proteomics and systems biology methods.

Authors:  Fan Zhang; Jake Y Chen
Journal:  BMC Genomics       Date:  2010-11-02       Impact factor: 3.969

5.  The Proteome of a Healthy Human during Physical Activity under Extreme Conditions.

Authors:  I M Larina; V A Ivanisenko; E N Nikolaev; A I Grigorev
Journal:  Acta Naturae       Date:  2014-07       Impact factor: 1.845

6.  A Systems Biological Approach to Understanding the Mechanisms Underlying the Therapeutic Potential of Red Ginseng Supplements against Metabolic Diseases.

Authors:  Eunseon Jeong; Yeni Lim; Kyeong Jin Kim; Hyeon-Hui Ki; Doheon Lee; Jaehyun Suh; Seung-Ho So; Oran Kwon; Ji Yeon Kim
Journal:  Molecules       Date:  2020-04-23       Impact factor: 4.411

7.  Searching the overlap between network modules with specific betweeness (S2B) and its application to cross-disease analysis.

Authors:  Marina L Garcia-Vaquero; Margarida Gama-Carvalho; Javier De Las Rivas; Francisco R Pinto
Journal:  Sci Rep       Date:  2018-08-01       Impact factor: 4.379

Review 8.  Bipolar patients and creative online practices: Sharing experiences of controversial treatments.

Authors:  Claudia Egher
Journal:  Health (London)       Date:  2019-03-28

9.  Nutrigenomics-Associated Impacts of Nutrients on Genes and Enzymes With Special Consideration of Aromatase.

Authors:  Helena Jenzer; Leila Sadeghi-Reeves
Journal:  Front Nutr       Date:  2020-04-09

10.  Using machine learning algorithms to identify genes essential for cell survival.

Authors:  Santosh Philips; Heng-Yi Wu; Lang Li
Journal:  BMC Bioinformatics       Date:  2017-10-03       Impact factor: 3.169

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