Literature DB >> 17660540

An exact sampling formula for the Wright-Fisher model and a solution to a conjecture about the finite-island model.

Sabin Lessard1.   

Abstract

An exact sampling formula for a Wright-Fisher population of fixed size N under the infinitely many neutral alleles model is deduced. This extends the Ewens formula for the configuration of a random sample to the case where the sample is drawn from a population of small size, that is, without the usual large-N and small-mutation-rate assumption. The formula is used to prove a conjecture ascertaining the validity of a diffusion approximation for the frequency of a mutant-type allele under weak selection in segregation with a wild-type allele in the limit finite-island model, namely, a population that is subdivided into a finite number of demes of size N and that receives an expected fraction m of migrants from a common migrant pool each generation, as the number of demes goes to infinity. This is done by applying the formula to the migrant ancestors of a single deme and sampling their types at random. The proof of the conjecture confirms an analogy between the island model and a random-mating population, but with a different timescale that has implications for estimation procedures.

Mesh:

Year:  2007        PMID: 17660540      PMCID: PMC2034630          DOI: 10.1534/genetics.107.077644

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  11 in total

1.  A diffusion approximation for selection and drift in a subdivided population.

Authors:  Joshua L Cherry; John Wakeley
Journal:  Genetics       Date:  2003-01       Impact factor: 4.562

2.  Polymorphism and divergence for island-model species.

Authors:  John Wakeley
Journal:  Genetics       Date:  2003-01       Impact factor: 4.562

3.  The many-demes limit for selection and drift in a subdivided population.

Authors:  John Wakeley; Tsuyoshi Takahashi
Journal:  Theor Popul Biol       Date:  2004-09       Impact factor: 1.570

4.  Ewens' sampling formula and related formulae: combinatorial proofs, extensions to variable population size and applications to ages of alleles.

Authors:  Robert C Griffiths; Sabin Lessard
Journal:  Theor Popul Biol       Date:  2005-11       Impact factor: 1.570

5.  Exact coalescent for the Wright-Fisher model.

Authors:  Yun-Xin Fu
Journal:  Theor Popul Biol       Date:  2006-01-19       Impact factor: 1.570

6.  Evolution in Mendelian Populations.

Authors:  S Wright
Journal:  Genetics       Date:  1931-03       Impact factor: 4.562

7.  The Sampling Theory of Neutral Alleles in an Island Population of Fluctuating Size

Authors: 
Journal:  Theor Popul Biol       Date:  1996-08       Impact factor: 1.570

8.  The sampling theory of neutral alleles and an urn model in population genetics.

Authors:  F M Hoppe
Journal:  J Math Biol       Date:  1987       Impact factor: 2.259

9.  The sampling theory of selectively neutral alleles.

Authors:  W J Ewens
Journal:  Theor Popul Biol       Date:  1972-03       Impact factor: 1.570

10.  Population genetics of polymorphism and divergence.

Authors:  S A Sawyer; D L Hartl
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

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  3 in total

1.  Dynamics of neutral and selected alleles when the offspring distribution is skewed.

Authors:  Ricky Der; Charles Epstein; Joshua B Plotkin
Journal:  Genetics       Date:  2012-06-01       Impact factor: 4.562

2.  Some consequences of demographic stochasticity in population genetics.

Authors:  Todd L Parsons; Christopher Quince; Joshua B Plotkin
Journal:  Genetics       Date:  2010-05-10       Impact factor: 4.562

3.  Diffusion approximations for one-locus multi-allele kin selection, mutation and random drift in group-structured populations: a unifying approach to selection models in population genetics.

Authors:  Sabin Lessard
Journal:  J Math Biol       Date:  2009-01-21       Impact factor: 2.259

  3 in total

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