Literature DB >> 15913688

Ewens' sampling formula and related formulae: combinatorial proofs, extensions to variable population size and applications to ages of alleles.

Robert C Griffiths1, Sabin Lessard.   

Abstract

Ewens' sampling formula, the probability distribution of a configuration of alleles in a sample of genes under the infinitely-many-alleles model of mutation, is proved by a direct combinatorial argument. The distribution is extended to a model where the population size may vary back in time. The distribution of age-ordered frequencies in the population is also derived in the model, extending the GEM distribution of age-ordered frequencies in a model with a constant-sized population. The genealogy of a rare allele is studied using a combinatorial approach. A connection is explored between the distribution of age-ordered frequencies and ladder indices and heights in a sequence of random variables. In a sample of n genes the connection is with ladder heights and indices in a sequence of draws from an urn containing balls labelled 1,2,...,n; and in the population the connection is with ladder heights and indices in a sequence of independent uniform random variables.

Mesh:

Year:  2005        PMID: 15913688     DOI: 10.1016/j.tpb.2005.02.004

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  11 in total

1.  AN ASYMPTOTIC SAMPLING FORMULA FOR THE COALESCENT WITH RECOMBINATION.

Authors:  Paul A Jenkins; Yun S Song
Journal:  Ann Appl Probab       Date:  2010-06       Impact factor: 1.872

2.  A Bayesian Approach to Inferring Rates of Selfing and Locus-Specific Mutation.

Authors:  Benjamin D Redelings; Seiji Kumagai; Andrey Tatarenkov; Liuyang Wang; Ann K Sakai; Stephen G Weller; Theresa M Culley; John C Avise; Marcy K Uyenoyama
Journal:  Genetics       Date:  2015-09-14       Impact factor: 4.562

3.  An exact sampling formula for the Wright-Fisher model and a solution to a conjecture about the finite-island model.

Authors:  Sabin Lessard
Journal:  Genetics       Date:  2007-07-29       Impact factor: 4.562

4.  Convergence time to the Ewens sampling formula in the infinite alleles Moran model.

Authors:  Joseph C Watkins
Journal:  J Math Biol       Date:  2009-03-15       Impact factor: 2.259

5.  Diffusion approximations for one-locus multi-allele kin selection, mutation and random drift in group-structured populations: a unifying approach to selection models in population genetics.

Authors:  Sabin Lessard
Journal:  J Math Biol       Date:  2009-01-21       Impact factor: 2.259

6.  APPROXIMATE SAMPLING FORMULAS FOR GENERAL FINITE-ALLELES MODELS OF MUTATION.

Authors:  Anand Bhaskar; John A Kamm; Yun S Song
Journal:  Adv Appl Probab       Date:  2012-06       Impact factor: 0.690

7.  Inductive determination of allele frequency spectrum probabilities in structured populations.

Authors:  Marcy K Uyenoyama; Naoki Takebayashi; Seiji Kumagai
Journal:  Theor Popul Biol       Date:  2019-01-11       Impact factor: 1.570

8.  Site frequency spectra from genomic SNP surveys.

Authors:  Ganeshkumar Ganapathy; Marcy K Uyenoyama
Journal:  Theor Popul Biol       Date:  2009-04-14       Impact factor: 1.570

9.  Importance sampling for the infinite sites model.

Authors:  Asger Hobolth; Marcy K Uyenoyama; Carsten Wiuf
Journal:  Stat Appl Genet Mol Biol       Date:  2008-10-30

10.  Allele frequency spectra in structured populations: Novel-allele probabilities under the labelled coalescent.

Authors:  Marcy K Uyenoyama; Naoki Takebayashi; Seiji Kumagai
Journal:  Theor Popul Biol       Date:  2020-03-03       Impact factor: 1.570

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