Literature DB >> 17639300

A genetic map of 1,000 SSR and DArT markers in a wide barley cross.

P R Hearnden1, P J Eckermann, G L McMichael, M J Hayden, J K Eglinton, K J Chalmers.   

Abstract

A high-density genetic map was developed from an F1-derived doubled haploid population generated from a cross between cultivated barley (Hordeum vulgare) and the subspecies H. vulgare ssp. spontaneum. The map comprises 1,000 loci, amplified using 536 SSR (558 loci) and 442 DArT markers. Of the SSRs, 149 markers (153 loci) were derived from barley ESTs, and 7 from wheat ESTs. A high level of polymorphism ( approximately 70%) was observed, which facilitated the mapping of 197 SSRs for which genetic assignments had not been previously reported. Comparison with a published composite map showed a high level of co-linearity and telomeric coverage on all seven chromosomes. This map provides access to previously unmapped SSRs, improved genome coverage due to the integration of DArT and EST-SSRs and overcomes locus order issues of composite maps constructed from the alignment of several genetic maps.

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Year:  2007        PMID： 17639300     DOI： 10.1007/s00122-007-0572-7

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.574


  28 in total

1.  A simple sequence repeat-based linkage map of barley.

Authors:  L Ramsay; M Macaulay; S degli Ivanissevich; K MacLean; L Cardle; J Fuller; K J Edwards; S Tuvesson; M Morgante; A Massari; E Maestri; N Marmiroli; T Sjakste; M Ganal; W Powell; R Waugh
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

2.  R/qtl: QTL mapping in experimental crosses.

Authors:  Karl W Broman; Hao Wu; Saunak Sen; Gary A Churchill
Journal:  Bioinformatics       Date:  2003-05-01       Impact factor: 6.937

3.  Diversity Arrays Technology (DArT) for whole-genome profiling of barley.

Authors:  Peter Wenzl; Jason Carling; David Kudrna; Damian Jaccoud; Eric Huttner; Andris Kleinhofs; Andrzej Kilian
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-10       Impact factor: 11.205

4.  Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress.

Authors:  Nils Rostoks; Sharon Mudie; Linda Cardle; Joanne Russell; Luke Ramsay; Allan Booth; Jan T Svensson; Steve I Wanamaker; Harkamal Walia; Edmundo M Rodriguez; Peter E Hedley; Hui Liu; Jenny Morris; Timothy J Close; David F Marshall; Robbie Waugh
Journal:  Mol Genet Genomics       Date:  2005-10-22       Impact factor: 3.291

5.  Towards map-based cloning of the barley stem rust resistance genes Rpg1 and rpg4 using rice as an intergenomic cloning vehicle.

Authors:  A Kilian; J Chen; F Han; B Steffenson; A Kleinhofs
Journal:  Plant Mol Biol       Date:  1997-09       Impact factor: 4.076

6.  A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome.

Authors:  A Kleinhofs; A Kilian; M A Saghai Maroof; R M Biyashev; P Hayes; F Q Chen; N Lapitan; A Fenwick; T K Blake; V Kanazin; E Ananiev; L Dahleen; D Kudrna; J Bollinger; S J Knapp; B Liu; M Sorrells; M Heun; J D Franckowiak; D Hoffman; R Skadsen; B J Steffenson
Journal:  Theor Appl Genet       Date:  1993-07       Impact factor: 5.699

7.  A microsatellite map of wheat.

Authors:  M S Röder; V Korzun; K Wendehake; J Plaschke; M H Tixier; P Leroy; M W Ganal
Journal:  Genetics       Date:  1998-08       Impact factor: 4.562

8.  Barley microsatellites: allele variation and mapping.

Authors:  J Becker; M Heun
Journal:  Plant Mol Biol       Date:  1995-02       Impact factor: 4.076

9.  Unigene derived microsatellite markers for the cereal genomes.

Authors:  Swarup K Parida; K Anand Raj Kumar; Vivek Dalal; Nagendra K Singh; Trilochan Mohapatra
Journal:  Theor Appl Genet       Date:  2006-01-21       Impact factor: 5.574

10.  A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits.

Authors:  Peter Wenzl; Haobing Li; Jason Carling; Meixue Zhou; Harsh Raman; Edie Paul; Phillippa Hearnden; Christina Maier; Ling Xia; Vanessa Caig; Jaroslava Ovesná; Mehmet Cakir; David Poulsen; Junping Wang; Rosy Raman; Kevin P Smith; Gary J Muehlbauer; Ken J Chalmers; Andris Kleinhofs; Eric Huttner; Andrzej Kilian
Journal:  BMC Genomics       Date:  2006-08-12       Impact factor: 3.969
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  26 in total

1.  Mapping of seedling resistance in barley to Puccinia striiformis f. sp. pseudohordei.

Authors:  L N Kamino; D Singh; M A Pallotta; N C Collins; R F Park
Journal:  J Appl Genet       Date:  2015-07-22       Impact factor: 3.240

2.  Comparative mapping of the Oregon Wolfe Barley using doubled haploid lines derived from female and male gametes.

Authors:  L Cistué; A Cuesta-Marcos; S Chao; B Echávarri; Y Chutimanitsakun; A Corey; T Filichkina; N Garcia-Mariño; I Romagosa; P M Hayes
Journal:  Theor Appl Genet       Date:  2011-02-11       Impact factor: 5.699

3.  Development of a molecular linkage map of pearl millet integrating DArT and SSR markers.

Authors:  A Supriya; S Senthilvel; T Nepolean; K Eshwar; V Rajaram; R Shaw; C T Hash; A Kilian; R C Yadav; M L Narasu
Journal:  Theor Appl Genet       Date:  2011-04-08       Impact factor: 5.699

4.  Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.).

Authors:  Thomas Lüpken; Nils Stein; Dragan Perovic; Antje Habekuss; Ilona Krämer; Urs Hähnel; Burkhard Steuernagel; Uwe Scholz; Rounan Zhou; Ruvini Ariyadasa; Stefan Taudien; Matthias Platzer; Mihaela Martis; Klaus Mayer; Wolfgang Friedt; Frank Ordon
Journal:  Theor Appl Genet       Date:  2013-03-02       Impact factor: 5.699

5.  High-density genetic map of durum wheat x wild emmer wheat based on SSR and DArT markers.

Authors:  Zvi Peleg; Yehoshua Saranga; Tatiana Suprunova; Yefim Ronin; Marion S Röder; Andrzej Kilian; Abraham B Korol; Tzion Fahima
Journal:  Theor Appl Genet       Date:  2008-04-25       Impact factor: 5.699

6.  HvNax3--a locus controlling shoot sodium exclusion derived from wild barley (Hordeum vulgare ssp. spontaneum).

Authors:  Yuri Shavrukov; Narendra K Gupta; Junji Miyazaki; Manahil N Baho; Kenneth J Chalmers; Mark Tester; Peter Langridge; Nicholas C Collins
Journal:  Funct Integr Genomics       Date:  2010-01-14       Impact factor: 3.410

7.  Comparison of genetic and cytogenetic maps of hexaploid wheat (Triticum aestivum L.) using SSR and DArT markers.

Authors:  Michael G Francki; Esther Walker; Allison C Crawford; Sue Broughton; Herbert W Ohm; Iain Barclay; Robin E Wilson; Robyn McLean
Journal:  Mol Genet Genomics       Date:  2008-11-20       Impact factor: 3.291

8.  Chromosomal location of genomic SSR markers associated with yellow rust resistance in Turkish bread wheat (Triticum aestivum L.).

Authors:  F Senturk Akfirat; F Ertugrul; S Hasancebi; Y Aydin; K Akan; Z Mert; M Cakir; A Altinkut Uncuoglu
Journal:  J Genet       Date:  2013       Impact factor: 1.166

9.  Development and implementation of high-throughput SNP genotyping in barley.

Authors:  Timothy J Close; Prasanna R Bhat; Stefano Lonardi; Yonghui Wu; Nils Rostoks; Luke Ramsay; Arnis Druka; Nils Stein; Jan T Svensson; Steve Wanamaker; Serdar Bozdag; Mikeal L Roose; Matthew J Moscou; Shiaoman Chao; Rajeev K Varshney; Péter Szucs; Kazuhiro Sato; Patrick M Hayes; David E Matthews; Andris Kleinhofs; Gary J Muehlbauer; Joseph DeYoung; David F Marshall; Kavitha Madishetty; Raymond D Fenton; Pascal Condamine; Andreas Graner; Robbie Waugh
Journal:  BMC Genomics       Date:  2009-12-04       Impact factor: 3.969

10.  DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum.

Authors:  Hai-Chun Jing; Carlos Bayon; Kostya Kanyuka; Simon Berry; Peter Wenzl; Eric Huttner; Andrzej Kilian; Kim E Hammond-Kosack
Journal:  BMC Genomics       Date:  2009-09-30       Impact factor: 3.969
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