Literature DB >> 21311855

Comparative mapping of the Oregon Wolfe Barley using doubled haploid lines derived from female and male gametes.

L Cistué1, A Cuesta-Marcos, S Chao, B Echávarri, Y Chutimanitsakun, A Corey, T Filichkina, N Garcia-Mariño, I Romagosa, P M Hayes.   

Abstract

The Oregon Wolfe Barley mapping population is a resource for genetics research and instruction. Prior reports are based on a population of doubled haploid (DH) lines developed by the Hordeum bulbosum (H.b.) method, which samples female gametes. We developed new DH lines from the same cross using anther culture (A.C.), which samples male gametes. Linkage maps were generated in each of the two subpopulations using the same 1,328 single nucleotide polymorphism markers. The linkage maps based on DH lines derived from the products of megasporogeneis and microsporogenesis revealed minor differences in terms of estimated recombination rates. There were no differences in locus ordering. There was greater segregation distortion in the A.C.-derived subpopulation than in the H.b.-derived subpopulation, but in the region showing the greatest distortion, the cause was more likely allelic variation at the ZEO1 plant height locus rather than to DH production method. The effects of segregation distortion and pleiotropy had greater impacts on estimates of quantitative trait locus effect than population size for reproductive fitness traits assayed under greenhouse conditions. The Oregon Wolfe Barley (OWB) population and data are community resources. Seed is available from three distribution centers located in North America, Europe, and Asia. Details on ordering seed sets, as well as complete genotype and phenotype data files, are available at http://wheat.pw.usda.gov/ggpages/maps/OWB/ .

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Year:  2011        PMID: 21311855     DOI: 10.1007/s00122-011-1540-9

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  32 in total

1.  Effect of population size on the estimation of QTL: a test using resistance to barley stripe rust.

Authors:  M I Vales; C C Schön; F Capettini; X M Chen; A E Corey; D E Mather; C C Mundt; K L Richardson; J S Sandoval-Islas; H F Utz; P M Hayes
Journal:  Theor Appl Genet       Date:  2005-11-15       Impact factor: 5.699

Review 2.  Meiotic recombination hotspots in plants.

Authors:  C Mézard
Journal:  Biochem Soc Trans       Date:  2006-08       Impact factor: 5.407

3.  A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics.

Authors:  Nils Stein; Manoj Prasad; Uwe Scholz; Thomas Thiel; Hangning Zhang; Markus Wolf; Raja Kota; Rajeev K Varshney; Dragan Perovic; Ivo Grosse; Andreas Graner
Journal:  Theor Appl Genet       Date:  2007-01-12       Impact factor: 5.699

Review 4.  The resurgence of haploids in higher plants.

Authors:  Brian P Forster; Erwin Heberle-Bors; Ken J Kasha; Alisher Touraev
Journal:  Trends Plant Sci       Date:  2007-07-12       Impact factor: 18.313

5.  Regeneration of zygotic-like microspore-derived embryos suggests an important role for the suspensor in early embryo patterning.

Authors:  Ence Darmo Jaya Supena; Budi Winarto; Tjitske Riksen; Ewa Dubas; André van Lammeren; Remko Offringa; Kim Boutilier; Jan Custers
Journal:  J Exp Bot       Date:  2008-02-13       Impact factor: 6.992

6.  GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley.

Authors:  Qiaojun Jia; Jingjuan Zhang; Sharon Westcott; Xiao-Qi Zhang; Mathew Bellgard; Reg Lance; Chengdao Li
Journal:  Funct Integr Genomics       Date:  2009-03-12       Impact factor: 3.410

7.  Construction of an RFLP map of barley.

Authors:  A Graner; A Jahoor; J Schondelmaier; H Siedler; K Pillen; G Fischbeck; G Wenzel; R G Herrmann
Journal:  Theor Appl Genet       Date:  1991-12       Impact factor: 5.699

8.  Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects.

Authors:  A E Melchinger; H F Utz; C C Schön
Journal:  Genetics       Date:  1998-05       Impact factor: 4.562

9.  High frequency haploid production in barley (Hordeum vulgare L.).

Authors:  K J Kasha; K N Kao
Journal:  Nature       Date:  1970-02-28       Impact factor: 49.962

10.  A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits.

Authors:  Peter Wenzl; Haobing Li; Jason Carling; Meixue Zhou; Harsh Raman; Edie Paul; Phillippa Hearnden; Christina Maier; Ling Xia; Vanessa Caig; Jaroslava Ovesná; Mehmet Cakir; David Poulsen; Junping Wang; Rosy Raman; Kevin P Smith; Gary J Muehlbauer; Ken J Chalmers; Andris Kleinhofs; Eric Huttner; Andrzej Kilian
Journal:  BMC Genomics       Date:  2006-08-12       Impact factor: 3.969

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  2 in total

1.  User guide for mapping-by-sequencing in Arabidopsis.

Authors:  Geo Velikkakam James; Vipul Patel; Karl J V Nordström; Jonas R Klasen; Patrice A Salomé; Detlef Weigel; Korbinian Schneeberger
Journal:  Genome Biol       Date:  2013-06-17       Impact factor: 13.583

2.  Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.

Authors:  James Cockram; Thomas Thiel; Burkhard Steuernagel; Nils Stein; Stefan Taudien; Paul C Bailey; Donal M O'Sullivan
Journal:  PLoS One       Date:  2012-09-24       Impact factor: 3.240

  2 in total

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