Literature DB >> 17639083

The multifunctional protein p54nrb/PSF recruits the exonuclease XRN2 to facilitate pre-mRNA 3' processing and transcription termination.

Syuzo Kaneko1, Orit Rozenblatt-Rosen, Matthew Meyerson, James L Manley.   

Abstract

Termination of RNA polymerase II transcription frequently requires a poly(A) signal and cleavage/polyadenylation factors. Recent work has shown that degradation of the downstream cleaved RNA by the exonuclease XRN2 promotes termination, but how XRN2 functions with 3'-processing factors to elicit termination remains unclear. Here we show that XRN2 physically associates with 3'-processing factors and accumulates at the 3' end of a transcribed gene. In vitro 3'-processing assays show that XRN2 is necessary to degrade the downstream RNA, but is not required for 3' cleavage. Significantly, degradation of the 3'-cleaved RNA was stimulated when coupled to cleavage. Unexpectedly, while investigating how XRN2 is recruited to the 3'-processing machinery, we found that XRN2 associates with p54nrb/NonO(p54)-protein-associated splicing factor (PSF), multifunctional proteins involved in several nuclear processes. Strikingly, p54 is also required for degradation of the 3'-cleaved RNA in vitro. p54 is present along the length of genes, and small interfering RNA (siRNA)-mediated knockdown leads to defects in XRN2 recruitment and termination. Together, our data indicate that p54nrb/PSF functions in recruitment of XRN2 to facilitate pre-mRNA 3' processing and transcription termination.

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Year:  2007        PMID: 17639083      PMCID: PMC1920172          DOI: 10.1101/gad.1565207

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  59 in total

1.  Identification of a regulated pathway for nuclear pre-mRNA turnover.

Authors:  C Bousquet-Antonelli; C Presutti; D Tollervey
Journal:  Cell       Date:  2000-09-15       Impact factor: 41.582

2.  Transcriptional termination and coupled polyadenylation in vitro.

Authors:  M Yonaha; N J Proudfoot
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

3.  RNA polymerase II is an essential mRNA polyadenylation factor.

Authors:  Y Hirose; J L Manley
Journal:  Nature       Date:  1998-09-03       Impact factor: 49.962

4.  Processing of the precursors to small nucleolar RNAs and rRNAs requires common components.

Authors:  E Petfalski; T Dandekar; Y Henry; D Tollervey
Journal:  Mol Cell Biol       Date:  1998-03       Impact factor: 4.272

5.  The C-terminal domain of RNA polymerase II couples mRNA processing to transcription.

Authors:  S McCracken; N Fong; K Yankulov; S Ballantyne; G Pan; J Greenblatt; S D Patterson; M Wickens; D L Bentley
Journal:  Nature       Date:  1997-01-23       Impact factor: 49.962

6.  Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p.

Authors:  Y Xue; X Bai; I Lee; G Kallstrom; J Ho; J Brown; A Stevens; A W Johnson
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

7.  Coupling termination of transcription to messenger RNA maturation in yeast.

Authors:  C E Birse; L Minvielle-Sebastia; B A Lee; W Keller; N J Proudfoot
Journal:  Science       Date:  1998-04-10       Impact factor: 47.728

8.  HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats.

Authors:  Jingyi Hui; Karl Stangl; William S Lane; Albrecht Bindereif
Journal:  Nat Struct Biol       Date:  2003-01

9.  Heterogeneous nuclear ribonucleoprotein L interacts with the 3' border of the internal ribosomal entry site of hepatitis C virus.

Authors:  B Hahm; Y K Kim; J H Kim; T Y Kim; S K Jang
Journal:  J Virol       Date:  1998-11       Impact factor: 5.103

10.  A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates.

Authors:  V I Bashkirov; H Scherthan; J A Solinger; J M Buerstedde; W D Heyer
Journal:  J Cell Biol       Date:  1997-02-24       Impact factor: 10.539

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  108 in total

1.  The RNA polymerase C-terminal domain: a new role in spliceosome assembly.

Authors:  Charles J David; James L Manley
Journal:  Transcription       Date:  2011 Sep-Oct

2.  Transcriptional activators enhance polyadenylation of mRNA precursors.

Authors:  Takashi Nagaike; James L Manley
Journal:  RNA Biol       Date:  2011-11-01       Impact factor: 4.652

3.  Coupled RNA polymerase II transcription and 3' end formation with yeast whole-cell extracts.

Authors:  Luisa Mariconti; Bernhard Loll; Karola Schlinkmann; Agnieszka Wengi; Anton Meinhart; Bernhard Dichtl
Journal:  RNA       Date:  2010-09-01       Impact factor: 4.942

Review 4.  Pre-mRNA 3'-end processing complex assembly and function.

Authors:  Serena Chan; Eun-A Choi; Yongsheng Shi
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-10-18       Impact factor: 9.957

5.  Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition.

Authors:  Nova Fong; Kristopher Brannan; Benjamin Erickson; Hyunmin Kim; Michael A Cortazar; Ryan M Sheridan; Tram Nguyen; Shai Karp; David L Bentley
Journal:  Mol Cell       Date:  2015-10-15       Impact factor: 17.970

6.  PSF controls expression of histone variants and cellular viability in thymocytes.

Authors:  Florian Heyd; Kristen W Lynch
Journal:  Biochem Biophys Res Commun       Date:  2011-10-06       Impact factor: 3.575

7.  CPF Recruitment to Non-canonical Transcription Termination Sites Triggers Heterochromatin Assembly and Gene Silencing.

Authors:  Tommy V Vo; Jothy Dhakshnamoorthy; Madeline Larkin; Martin Zofall; Gobi Thillainadesan; Vanivilasini Balachandran; Sahana Holla; David Wheeler; Shiv I S Grewal
Journal:  Cell Rep       Date:  2019-07-02       Impact factor: 9.423

Review 8.  3' end mRNA processing: molecular mechanisms and implications for health and disease.

Authors:  Sven Danckwardt; Matthias W Hentze; Andreas E Kulozik
Journal:  EMBO J       Date:  2008-02-06       Impact factor: 11.598

9.  Studies of the 5' exonuclease and endonuclease activities of CPSF-73 in histone pre-mRNA processing.

Authors:  Xiao-cui Yang; Kelly D Sullivan; William F Marzluff; Zbigniew Dominski
Journal:  Mol Cell Biol       Date:  2008-10-27       Impact factor: 4.272

10.  Identification of mRNA binding proteins that regulate the stability of LDL receptor mRNA through AU-rich elements.

Authors:  Hai Li; Wei Chen; Yue Zhou; Parveen Abidi; Orr Sharpe; William H Robinson; Fredric B Kraemer; Jingwen Liu
Journal:  J Lipid Res       Date:  2009-01-13       Impact factor: 5.922

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