Literature DB >> 17620717

Expression, purification and preliminary X-ray characterization of DL-2-haloacid dehalogenase from Methylobacterium sp. CPA1.

Rie Omi1, Keiji Jitsumori, Takahiro Yamauchi, Susumu Ichiyama, Tatsuo Kurihara, Nobuyoshi Esaki, Nobuo Kamiya, Ken Hirotsu, Ikuko Miyahara.   

Abstract

DL-2-Haloacid dehalogenase from Methylobacterium sp. CPA1 (DL-DEX Mb) is a unique enzyme that catalyzes the dehalogenation reaction without the formation of an ester intermediate. A recombinant form of DL-DEX Mb has been expressed in Escherichia coli, purified and crystallized using the hanging-drop vapour-diffusion method. The crystal belongs to the hexagonal space group P6(3), with unit-cell parameters a = b = 186.2, c = 114.4 A. The crystals are likely to contain between four and eight monomers in the asymmetric unit, with a V(M) value of 4.20-2.10 A3 Da(-1). A self-rotation function revealed peaks on the chi = 180 degrees section. X-ray data have been collected to 1.75 A resolution.

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Year:  2007        PMID: 17620717      PMCID: PMC2335131          DOI: 10.1107/S1744309107027273

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

1.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

2.  Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.

Authors:  Y F Li; Y Hata; T Fujii; T Hisano; M Nishihara; T Kurihara; N Esaki
Journal:  J Biol Chem       Date:  1998-06-12       Impact factor: 5.157

3.  Paracatalytic inactivation of L-2-haloacid dehalogenase from Pseudomonas sp. YL by hydroxylamine. Evidence for the formation of an ester intermediate.

Authors:  J Q Liu; T Kurihara; M Miyagi; S Tsunasawa; M Nishihara; N Esaki; K Soda
Journal:  J Biol Chem       Date:  1997-02-07       Impact factor: 5.157

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Structure of 4-chlorobenzoyl coenzyme A dehalogenase determined to 1.8 A resolution: an enzyme catalyst generated via adaptive mutation.

Authors:  M M Benning; K L Taylor; G Yang; H Xiang; G Wesenberg; D Dunaway-Mariano; H M Holden
Journal:  Biochemistry       Date:  1996-06-25       Impact factor: 3.162

6.  Evidence for nucleophilic catalysis in the aromatic substitution reaction catalyzed by (4-chlorobenzoyl)coenzyme A dehalogenase.

Authors:  G Yang; P H Liang; D Dunaway-Mariano
Journal:  Biochemistry       Date:  1994-07-19       Impact factor: 3.162

Review 7.  Bacterial dehalogenases: biochemistry, genetics, and biotechnological applications.

Authors:  S Fetzner; F Lingens
Journal:  Microbiol Rev       Date:  1994-12

8.  Site-directed mutagenesis and oxygen isotope incorporation studies of the nucleophilic aspartate of haloalkane dehalogenase.

Authors:  F Pries; J Kingma; M Pentenga; G van Pouderoyen; C M Jeronimus-Stratingh; A P Bruins; D B Janssen
Journal:  Biochemistry       Date:  1994-02-08       Impact factor: 3.162

9.  Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase.

Authors:  K H Verschueren; F Seljée; H J Rozeboom; K H Kalk; B W Dijkstra
Journal:  Nature       Date:  1993-06-24       Impact factor: 49.962

10.  Reaction mechanism of L-2-haloacid dehalogenase of Pseudomonas sp. YL. Identification of Asp10 as the active site nucleophile by 18O incorporation experiments.

Authors:  J Q Liu; T Kurihara; M Miyagi; N Esaki; K Soda
Journal:  J Biol Chem       Date:  1995-08-04       Impact factor: 5.157

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  4 in total

1.  Purification, crystallization and preliminary crystallographic analysis of DehI, a group I alpha-haloacid dehalogenase from Pseudomonas putida strain PP3.

Authors:  Jason W Schmidberger; Jackie A Wilce; Andrew J Weightman; Matthew C J Wilce
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-07

2.  Concurrent Haloalkanoate Degradation and Chlorate Reduction by Pseudomonas chloritidismutans AW-1T.

Authors:  Peng Peng; Ying Zheng; Jasper J Koehorst; Peter J Schaap; Alfons J M Stams; Hauke Smidt; Siavash Atashgahi
Journal:  Appl Environ Microbiol       Date:  2017-05-31       Impact factor: 4.792

3.  Insights into the molecular mechanism of dehalogenation catalyzed by D-2-haloacid dehalogenase from crystal structures.

Authors:  Yayue Wang; Yanbin Feng; Xupeng Cao; Yinghui Liu; Song Xue
Journal:  Sci Rep       Date:  2018-01-23       Impact factor: 4.379

Review 4.  Dehalogenases: From Improved Performance to Potential Microbial Dehalogenation Applications.

Authors:  Thiau-Fu Ang; Jonathan Maiangwa; Abu Bakar Salleh; Yahaya M Normi; Thean Chor Leow
Journal:  Molecules       Date:  2018-05-07       Impact factor: 4.411

  4 in total

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