Literature DB >> 18607084

Purification, crystallization and preliminary crystallographic analysis of DehI, a group I alpha-haloacid dehalogenase from Pseudomonas putida strain PP3.

Jason W Schmidberger1, Jackie A Wilce, Andrew J Weightman, Matthew C J Wilce.   

Abstract

Pseudomonas putida strain PP3 produces two dehalogenases, DehI and DehII, which belong to the group I and II alpha-haloacid dehalogenases, respectively. Group I dehalogenases catalyse the removal of halides from D-haloalkanoic acids and in some cases also the L-enantiomers, both substituted at their chiral centres. Studies of members of this group have resulted in the proposal of general catalytic mechanisms, although no structural information is available in order to better characterize their function. This work presents the initial stages of the structural investigation of the group I alpha-haloacid dehalogenase DehI. The DehI gene was cloned into a pET15b vector with an N-terminal His tag and expressed in Escherichia coli Nova Blue strain. Purified protein was crystallized in 25% PEG 3350, 0.4 M lithium sulfate and 0.1 M bis-tris buffer pH 6.0. The crystals were primitive monoclinic (space group P2(1)), with unit-cell parameters a = 68.32, b = 111.86, c = 75.13 A, alpha = 90, beta = 93.7, gamma = 90 degrees , and a complete native data set was collected. Molecular replacement is not an option for structure determination, so further experimental phasing methods will be necessary.

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Year:  2008        PMID: 18607084      PMCID: PMC2443979          DOI: 10.1107/S1744309108008865

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

1.  Mutagenic analysis of the conserved residues in dehalogenase IVa of Burkholderia cepacia MBA4.

Authors:  B C Pang; J S Tsang
Journal:  FEMS Microbiol Lett       Date:  2001-10-16       Impact factor: 2.742

2.  Bacterial DL-2-haloacid dehalogenase from Pseudomonas sp. strain 113: gene cloning and structural comparison with D- and L-2-haloacid dehalogenases.

Authors:  V Nardi-Dei; T Kurihara; C Park; N Esaki; K Soda
Journal:  J Bacteriol       Date:  1997-07       Impact factor: 3.490

3.  Expression, purification and preliminary X-ray characterization of DL-2-haloacid dehalogenase from Methylobacterium sp. CPA1.

Authors:  Rie Omi; Keiji Jitsumori; Takahiro Yamauchi; Susumu Ichiyama; Tatsuo Kurihara; Nobuyoshi Esaki; Nobuo Kamiya; Ken Hirotsu; Ikuko Miyahara
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-06-15

4.  Comprehensive site-directed mutagenesis of L-2-halo acid dehalogenase to probe catalytic amino acid residues.

Authors:  T Kurihara; J Q Liu; V Nardi-Dei; H Koshikawa; N Esaki; K Soda
Journal:  J Biochem       Date:  1995-06       Impact factor: 3.387

5.  Identification of the dimerization domain of dehalogenase IVa of Burkholderia cepacia MBA4.

Authors:  J S Tsang; B C Pang
Journal:  Appl Environ Microbiol       Date:  2000-08       Impact factor: 4.792

6.  Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.

Authors:  T Hisano; Y Hata; T Fujii; J Q Liu; T Kurihara; N Esaki; K Soda
Journal:  J Biol Chem       Date:  1996-08-23       Impact factor: 5.157

7.  Crystal structure of the probable haloacid dehalogenase PH0459 from Pyrococcus horikoshii OT3.

Authors:  Ryoichi Arai; Mutsuko Kukimoto-Niino; Chizu Kuroishi; Yoshitaka Bessho; Mikako Shirouzu; Shigeyuki Yokoyama
Journal:  Protein Sci       Date:  2005-12-29       Impact factor: 6.725

8.  Protein engineering of the 2-haloacid halidohydrolase IVa from Pseudomonas cepacia MBA4.

Authors:  W Asmara; U Murdiyatmo; A J Baines; A T Bull; D J Hardman
Journal:  Biochem J       Date:  1993-05-15       Impact factor: 3.857

9.  Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4.

Authors:  Jason W Schmidberger; Jackie A Wilce; Jimmy S H Tsang; Matthew C J Wilce
Journal:  J Mol Biol       Date:  2007-02-20       Impact factor: 5.469

10.  The dehalogenase gene dehI from Pseudomonas putida PP3 is carried on an unusual mobile genetic element designated DEH.

Authors:  A W Thomas; J H Slater; A J Weightman
Journal:  J Bacteriol       Date:  1992-03       Impact factor: 3.490

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  1 in total

Review 1.  Dehalogenases: From Improved Performance to Potential Microbial Dehalogenation Applications.

Authors:  Thiau-Fu Ang; Jonathan Maiangwa; Abu Bakar Salleh; Yahaya M Normi; Thean Chor Leow
Journal:  Molecules       Date:  2018-05-07       Impact factor: 4.411

  1 in total

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