Literature DB >> 17620413

Chromatin disassembly from the PHO5 promoter is essential for the recruitment of the general transcription machinery and coactivators.

Melissa W Adkins1, Stephanie K Williams, Jeffrey Linger, Jessica K Tyler.   

Abstract

The disassembly of promoter nucleosomes appears to be a general property of highly transcribed eukaryotic genes. We have previously shown that the disassembly of chromatin from the promoters of the Saccharomyces cerevisiae PHO5 and PHO8 genes, mediated by the histone chaperone anti-silencing function 1 (Asf1), is essential for transcriptional activation upon phosphate depletion. This mechanism of transcriptional regulation is shared with the ADY2 and ADH2 genes upon glucose removal. Promoter chromatin disassembly by Asf1 is required for recruitment of TBP and RNA polymerase II, but not the Pho4 and Pho2 activators. Furthermore, accumulation of SWI/SNF and SAGA at the PHO5 promoter requires promoter chromatin disassembly. By contrast, the requirement for SWI/SNF and SAGA to facilitate Pho4 activator recruitment to the nucleosome-buried binding site in the PHO5 promoter occurs prior to chromatin disassembly and is distinct from the stable recruitment of SWI/SNF and SAGA that occurs after chromatin disassembly.

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Year:  2007        PMID: 17620413      PMCID: PMC2099613          DOI: 10.1128/MCB.00981-07

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  60 in total

1.  Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

Authors:  Hans Reinke; Wolfram Hörz
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

2.  Removal of promoter nucleosomes by disassembly rather than sliding in vivo.

Authors:  Hinrich Boeger; Joachim Griesenbeck; J Seth Strattan; Roger D Kornberg
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

3.  Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo.

Authors:  Arnold Kristjuhan; Jesper Q Svejstrup
Journal:  EMBO J       Date:  2004-09-30       Impact factor: 11.598

4.  Evidence for nucleosome depletion at active regulatory regions genome-wide.

Authors:  Cheol-Koo Lee; Yoichiro Shibata; Bhargavi Rao; Brian D Strahl; Jason D Lieb
Journal:  Nat Genet       Date:  2004-07-11       Impact factor: 38.330

5.  Transcription elongation factors repress transcription initiation from cryptic sites.

Authors:  Craig D Kaplan; Lisa Laprade; Fred Winston
Journal:  Science       Date:  2003-08-22       Impact factor: 47.728

6.  Recruitment of the NuA4 complex poises the PHO5 promoter for chromatin remodeling and activation.

Authors:  Amine Nourani; Rhea T Utley; Stéphane Allard; Jacques Côté
Journal:  EMBO J       Date:  2004-06-03       Impact factor: 11.598

7.  Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes.

Authors:  Melissa W Adkins; Susan R Howar; Jessica K Tyler
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

8.  Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.

Authors:  Hideaki Tagami; Dominique Ray-Gallet; Geneviève Almouzni; Yoshihiro Nakatani
Journal:  Cell       Date:  2004-01-09       Impact factor: 41.582

9.  The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo.

Authors:  Paul B Mason; Kevin Struhl
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

10.  Global nucleosome occupancy in yeast.

Authors:  Bradley E Bernstein; Chih Long Liu; Emily L Humphrey; Ethan O Perlstein; Stuart L Schreiber
Journal:  Genome Biol       Date:  2004-08-20       Impact factor: 13.583

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  48 in total

Review 1.  Coupling polymerase pausing and chromatin landscapes for precise regulation of transcription.

Authors:  Daniel A Gilchrist; Karen Adelman
Journal:  Biochim Biophys Acta       Date:  2012-03-02

2.  Nucleosome interactions and stability in an ordered nucleosome array model system.

Authors:  Melissa J Blacketer; Sarah J Feely; Michael A Shogren-Knaak
Journal:  J Biol Chem       Date:  2010-08-25       Impact factor: 5.157

3.  An rtt109-independent role for vps75 in transcription-associated nucleosome dynamics.

Authors:  Luke A Selth; Yahli Lorch; Maria T Ocampo-Hafalla; Richard Mitter; Michael Shales; Nevan J Krogan; Roger D Kornberg; Jesper Q Svejstrup
Journal:  Mol Cell Biol       Date:  2009-05-26       Impact factor: 4.272

4.  The transcriptional coactivators SAGA, SWI/SNF, and mediator make distinct contributions to activation of glucose-repressed genes.

Authors:  Rhiannon K Biddick; G Lynn Law; Kevin Khaw Beng Chin; Elton T Young
Journal:  J Biol Chem       Date:  2008-09-30       Impact factor: 5.157

5.  Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation.

Authors:  Stephanie K Williams; David Truong; Jessica K Tyler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-24       Impact factor: 11.205

6.  A matter of access. Nucleosome disassembly from gene promoters is the central goal of transcriptional activators.

Authors:  Zheng Hu; Kaifu Chen; Wei Li; Jessica K Tyler
Journal:  Transcription       Date:  2014

Review 7.  Role of chromatin states in transcriptional memory.

Authors:  Sharmistha Kundu; Craig L Peterson
Journal:  Biochim Biophys Acta       Date:  2009-02-21

8.  Histone chaperone ASF1B promotes human β-cell proliferation via recruitment of histone H3.3.

Authors:  Pradyut K Paul; Mary E Rabaglia; Chen-Yu Wang; Donald S Stapleton; Ning Leng; Christina Kendziorski; Peter W Lewis; Mark P Keller; Alan D Attie
Journal:  Cell Cycle       Date:  2016-10-18       Impact factor: 4.534

9.  Phosphorylation-mediated control of histone chaperone ASF1 levels by Tousled-like kinases.

Authors:  Maxim Pilyugin; Jeroen Demmers; C Peter Verrijzer; Francois Karch; Yuri M Moshkin
Journal:  PLoS One       Date:  2009-12-16       Impact factor: 3.240

10.  Epigenetic inheritance of an inducibly nucleosome-depleted promoter and its associated transcriptional state in the apparent absence of transcriptional activators.

Authors:  Ryosuke Ohsawa; Melissa Adkins; Jessica K Tyler
Journal:  Epigenetics Chromatin       Date:  2009-09-11       Impact factor: 4.954

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