Literature DB >> 17597776

Methods and strategies for analyzing copy number variation using DNA microarrays.

Nigel P Carter1.   

Abstract

The association of DNA copy-number variation (CNV) with specific gene function and human disease has been long known, but the wide scope and prevalence of this form of variation has only recently been fully appreciated. The latest studies using microarray technology have demonstrated that as much as 12% of the human genome and thousands of genes are variable in copy number, and this diversity is likely to be responsible for a significant proportion of normal phenotypic variation. Current challenges involve developing methods not only for detecting and cataloging CNVs in human populations at increasingly higher resolution but also for determining the association of CNVs with biological function, recent human evolution, and common and complex human disease.

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Year:  2007        PMID: 17597776      PMCID: PMC2697494          DOI: 10.1038/ng2028

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  52 in total

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Authors:  Devin P Locke; Andrew J Sharp; Steven A McCarroll; Sean D McGrath; Tera L Newman; Ze Cheng; Stuart Schwartz; Donna G Albertson; Daniel Pinkel; David M Altshuler; Evan E Eichler
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Journal:  Acta Genet Med Gemellol (Roma)       Date:  1981

9.  High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

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Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

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Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

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  187 in total

Review 1.  Regions of homozygosity and their impact on complex diseases and traits.

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Review 2.  Detecting structural variations in the human genome using next generation sequencing.

Authors:  Ruibin Xi; Tae-Min Kim; Peter J Park
Journal:  Brief Funct Genomics       Date:  2011-01-06       Impact factor: 4.241

3.  Large common deletions associate with mortality at old age.

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Journal:  Hum Mol Genet       Date:  2011-08-11       Impact factor: 6.150

4.  Assessment of cumulative evidence for the association between glutathione S-transferase polymorphisms and lung cancer: application of the Venice interim guidelines.

Authors:  Scott M Langevin; John P A Ioannidis; Paolo Vineis; Emanuela Taioli
Journal:  Pharmacogenet Genomics       Date:  2010-10       Impact factor: 2.089

Review 5.  Patterns of Chromosomal Aberrations in Solid Tumors.

Authors:  Marian Grade; Michael J Difilippantonio; Jordi Camps
Journal:  Recent Results Cancer Res       Date:  2015

6.  A novel signal processing approach for the detection of copy number variations in the human genome.

Authors:  Catherine Stamoulis; Rebecca A Betensky
Journal:  Bioinformatics       Date:  2011-07-12       Impact factor: 6.937

7.  Chaos in the embryo.

Authors:  David H Ledbetter
Journal:  Nat Med       Date:  2009-05       Impact factor: 53.440

8.  Molecular and clinical characterization of de novo and familial cases with microduplication 3q29: guidelines for copy number variation case reporting.

Authors:  S Goobie; J Knijnenburg; D Fitzpatrick; F H Sharkey; A C Lionel; C R Marshall; T Azam; M Shago; K Chong; R Mendoza-Londono; N S den Hollander; C Ruivenkamp; E Maher; H J Tanke; K Szuhai; R F Wintle; S W Scherer
Journal:  Cytogenet Genome Res       Date:  2009-03-11       Impact factor: 1.636

9.  Copy number variant analysis using genome-wide mate-pair sequencing.

Authors:  James B Smadbeck; Sarah H Johnson; Stephanie A Smoley; Athanasios Gaitatzes; Travis M Drucker; Roman M Zenka; Farhad Kosari; Stephen J Murphy; Nicole Hoppman; Umut Aypar; William R Sukov; Robert B Jenkins; Hutton M Kearney; Andrew L Feldman; George Vasmatzis
Journal:  Genes Chromosomes Cancer       Date:  2018-07-30       Impact factor: 5.006

10.  Copy number variation and schizophrenia.

Authors:  David St Clair
Journal:  Schizophr Bull       Date:  2008-11-05       Impact factor: 9.306

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