Literature DB >> 21104274

Regions of homozygosity and their impact on complex diseases and traits.

Chee Seng Ku1, Nasheen Naidoo, Shu Mei Teo, Yudi Pawitan.   

Abstract

Regions of homozygosity (ROHs) are more abundant in the human genome than previously thought. These regions are without heterozygosity, i.e. all the genetic variations within the regions have two identical alleles. At present there are no standardized criteria for defining the ROHs resulting in the different studies using their own criteria in the analysis of homozygosity. Compared to the era of genotyping microsatellite markers, the advent of high-density single nucleotide polymorphism genotyping arrays has provided an unparalleled opportunity to comprehensively detect these regions in the whole genome in different populations. Several studies have identified ROHs which were associated with complex phenotypes such as schizophrenia, late-onset of Alzheimer's disease and height. Collectively, these studies have conclusively shown the abundance of ROHs larger than 1 Mb in outbred populations. The homozygosity association approach holds great promise in identifying genetic susceptibility loci harboring recessive variants for complex diseases and traits.

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Year:  2010        PMID: 21104274     DOI: 10.1007/s00439-010-0920-6

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  97 in total

1.  Long homozygous chromosomal segments in reference families from the centre d'Etude du polymorphisme humain.

Authors:  K W Broman; J L Weber
Journal:  Am J Hum Genet       Date:  1999-12       Impact factor: 11.025

2.  Inbreeding and risk of late onset complex disease.

Authors:  I Rudan; D Rudan; H Campbell; A Carothers; A Wright; N Smolej-Narancic; B Janicijevic; L Jin; R Chakraborty; R Deka; P Rudan
Journal:  J Med Genet       Date:  2003-12       Impact factor: 6.318

Review 3.  Genome-wide association studies for common diseases and complex traits.

Authors:  Joel N Hirschhorn; Mark J Daly
Journal:  Nat Rev Genet       Date:  2005-02       Impact factor: 53.242

4.  Homozygosity haplotype allows a genomewide search for the autosomal segments shared among patients.

Authors:  Hitoshi Miyazawa; Masaaki Kato; Takuya Awata; Masakazu Kohda; Hiroyasu Iwasa; Nobuyuki Koyama; Tomoaki Tanaka; Shunei Kyo; Yasushi Okazaki; Koichi Hagiwara
Journal:  Am J Hum Genet       Date:  2007-05-02       Impact factor: 11.025

Review 5.  The genetic aetiology of Silver-Russell syndrome.

Authors:  S Abu-Amero; D Monk; J Frost; M Preece; P Stanier; G E Moore
Journal:  J Med Genet       Date:  2007-12-21       Impact factor: 6.318

6.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

7.  Runs of homozygosity identify a recessive locus 12q21.31 for human adult height.

Authors:  Tie-Lin Yang; Yan Guo; Li-Shu Zhang; Qing Tian; Han Yan; Christopher J Papasian; Robert R Recker; Hong-Wen Deng
Journal:  J Clin Endocrinol Metab       Date:  2010-05-13       Impact factor: 5.958

8.  Long contiguous stretches of homozygosity in the human genome.

Authors:  Ling-Hui Li; Sheng-Feng Ho; Chien-Hsiun Chen; Chun-Yu Wei; Wan-Ching Wong; Li-Ying Li; Shuen-Iu Hung; Wen-Hung Chung; Wen-Han Pan; Ming-Ta M Lee; Fuu-Jen Tsai; Ching-Fen Chang; Jer-Yuarn Wu; Yuan-Tsong Chen
Journal:  Hum Mutat       Date:  2006-11       Impact factor: 4.878

9.  A highly annotated whole-genome sequence of a Korean individual.

Authors:  Jong-Il Kim; Young Seok Ju; Hansoo Park; Sheehyun Kim; Seonwook Lee; Jae-Hyuk Yi; Joann Mudge; Neil A Miller; Dongwan Hong; Callum J Bell; Hye-Sun Kim; In-Soon Chung; Woo-Chung Lee; Ji-Sun Lee; Seung-Hyun Seo; Ji-Young Yun; Hyun Nyun Woo; Heewook Lee; Dongwhan Suh; Seungbok Lee; Hyun-Jin Kim; Maryam Yavartanoo; Minhye Kwak; Ying Zheng; Mi Kyeong Lee; Hyunjun Park; Jeong Yeon Kim; Omer Gokcumen; Ryan E Mills; Alexander Wait Zaranek; Joseph Thakuria; Xiaodi Wu; Ryan W Kim; Jim J Huntley; Shujun Luo; Gary P Schroth; Thomas D Wu; HyeRan Kim; Kap-Seok Yang; Woong-Yang Park; Hyungtae Kim; George M Church; Charles Lee; Stephen F Kingsmore; Jeong-Sun Seo
Journal:  Nature       Date:  2009-07-08       Impact factor: 49.962

Review 10.  Application of genome-wide single nucleotide polymorphism typing: simple association and beyond.

Authors:  J Raphael Gibbs; Andrew Singleton
Journal:  PLoS Genet       Date:  2006-10-06       Impact factor: 5.917

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Authors:  Liron Abuhatzira; Alon Shamir; Dustin E Schones; Alejandro A Schäffer; Michael Bustin
Journal:  J Biol Chem       Date:  2011-10-17       Impact factor: 5.157

2.  Understanding the Hidden Complexity of Latin American Population Isolates.

Authors:  Jazlyn A Mooney; Christian D Huber; Susan Service; Jae Hoon Sul; Clare D Marsden; Zhongyang Zhang; Chiara Sabatti; Andrés Ruiz-Linares; Gabriel Bedoya; Nelson Freimer; Kirk E Lohmueller
Journal:  Am J Hum Genet       Date:  2018-10-25       Impact factor: 11.025

3.  Excess of homozygosity in the major histocompatibility complex in schizophrenia.

Authors:  Semanti Mukherjee; Saurav Guha; Masashi Ikeda; Nakao Iwata; Anil K Malhotra; Itsik Pe'er; Ariel Darvasi; Todd Lencz
Journal:  Hum Mol Genet       Date:  2014-06-18       Impact factor: 6.150

Review 4.  The application of genome-wide SNP genotyping methods in studies on livestock genomes.

Authors:  Artur Gurgul; Ewelina Semik; Klaudia Pawlina; Tomasz Szmatoła; Igor Jasielczuk; Monika Bugno-Poniewierska
Journal:  J Appl Genet       Date:  2014-02-25       Impact factor: 3.240

5.  Genomic diversity and population structure of three autochthonous Greek sheep breeds assessed with genome-wide DNA arrays.

Authors:  S Michailidou; G Tsangaris; G C Fthenakis; A Tzora; I Skoufos; S C Karkabounas; G Banos; A Argiriou; G Arsenos
Journal:  Mol Genet Genomics       Date:  2018-01-25       Impact factor: 3.291

6.  Genome-wide Survey of Runs of Homozygosity Identifies Recessive Loci for Bone Mineral Density in Caucasian and Chinese Populations.

Authors:  Tie-Lin Yang; Yan Guo; Ji-Gang Zhang; Chao Xu; Qing Tian; Hong-Wen Deng
Journal:  J Bone Miner Res       Date:  2015-06-16       Impact factor: 6.741

7.  The Concept of Immunogenetics.

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8.  Evaluation of artificial selection in Standard Poodles using whole-genome sequencing.

Authors:  Steven G Friedenberg; Kathryn M Meurs; Trudy F C Mackay
Journal:  Mamm Genome       Date:  2016-08-10       Impact factor: 2.957

9.  Genome-wide autozygosity is associated with lower general cognitive ability.

Authors:  D P Howrigan; M A Simonson; G Davies; S E Harris; A Tenesa; J M Starr; D C Liewald; I J Deary; A McRae; M J Wright; G W Montgomery; N Hansell; N G Martin; A Payton; M Horan; W E Ollier; A Abdellaoui; D I Boomsma; P DeRosse; E E M Knowles; D C Glahn; S Djurovic; I Melle; O A Andreassen; A Christoforou; V M Steen; S L Hellard; K Sundet; I Reinvang; T Espeseth; A J Lundervold; I Giegling; B Konte; A M Hartmann; D Rujescu; P Roussos; S Giakoumaki; K E Burdick; P Bitsios; G Donohoe; R P Corley; P M Visscher; N Pendleton; A K Malhotra; B M Neale; T Lencz; M C Keller
Journal:  Mol Psychiatry       Date:  2015-09-22       Impact factor: 15.992

10.  Runs of Homozygosity: Association with Coronary Artery Disease and Gene Expression in Monocytes and Macrophages.

Authors:  Paraskevi Christofidou; Christopher P Nelson; Majid Nikpay; Liming Qu; Mingyao Li; Christina Loley; Radoslaw Debiec; Peter S Braund; Matthew Denniff; Fadi J Charchar; Ares Rocanin Arjo; David-Alexandre Trégouët; Alison H Goodall; Francois Cambien; Willem H Ouwehand; Robert Roberts; Heribert Schunkert; Christian Hengstenberg; Muredach P Reilly; Jeanette Erdmann; Ruth McPherson; Inke R König; John R Thompson; Nilesh J Samani; Maciej Tomaszewski
Journal:  Am J Hum Genet       Date:  2015-07-09       Impact factor: 11.025

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