Literature DB >> 17588514

A hand-off mechanism for primosome assembly in replication restart.

Matthew Lopper1, Ruethairat Boonsombat, Steven J Sandler, James L Keck.   

Abstract

Collapsed DNA replication forks must be reactivated through origin-independent reloading of the replication machinery (replisome) to ensure complete duplication of cellular genomes. In E. coli, the PriA-dependent pathway is the major replication restart mechanism and requires primosome proteins PriA, PriB, and DnaT for replisome reloading. However, the molecular mechanisms that regulate origin-independent replisome loading are not fully understood. Here, we demonstrate that assembly of primosome protein complexes represents a key regulatory mechanism, as inherently weak PriA-PriB and PriB-DnaT interactions are strongly stimulated by single-stranded DNA. Furthermore, the binding site on PriB for single-stranded DNA partially overlaps the binding sites for PriA and DnaT, suggesting a dynamic primosome assembly process in which single-stranded DNA is handed off from one primosome protein to another as a repaired replication fork is reactivated. This model helps explain how origin-independent initiation of DNA replication is restricted to repaired replication forks, preventing overreplication of the genome.

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Year:  2007        PMID: 17588514      PMCID: PMC1950665          DOI: 10.1016/j.molcel.2007.05.012

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  25 in total

1.  Two modes of PriA binding to DNA.

Authors:  P Nurse; J Liu; K J Marians
Journal:  J Biol Chem       Date:  1999-08-27       Impact factor: 5.157

2.  Ten proteins required for conversion of phiX174 single-stranded DNA to duplex form in vitro. Resolution and reconstitution.

Authors:  R Schekman; J H Weiner; A Weiner; A Kornberg
Journal:  J Biol Chem       Date:  1975-08-10       Impact factor: 5.157

3.  Escherichia coli replication factor Y, a component of the primosome, can act as a DNA helicase.

Authors:  M S Lee; K J Marians
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

4.  The ordered assembly of the phiX174-type primosome. I. Isolation and identification of intermediate protein-DNA complexes.

Authors:  J Y Ng; K J Marians
Journal:  J Biol Chem       Date:  1996-06-28       Impact factor: 5.157

5.  The ordered assembly of the phiX174-type primosome. III. PriB facilitates complex formation between PriA and DnaT.

Authors:  J Liu; P Nurse; K J Marians
Journal:  J Biol Chem       Date:  1996-06-28       Impact factor: 5.157

6.  The ordered assembly of the phiX174-type primosome. II. Preservation of primosome composition from assembly through replication.

Authors:  J Y Ng; K J Marians
Journal:  J Biol Chem       Date:  1996-06-28       Impact factor: 5.157

7.  The DNA replication protein PriA and the recombination protein RecG bind D-loops.

Authors:  P McGlynn; A A Al-Deib; J Liu; K J Marians; R G Lloyd
Journal:  J Mol Biol       Date:  1997-07-11       Impact factor: 5.469

8.  Crystal structure of PriB, a component of the Escherichia coli replication restart primosome.

Authors:  Matthew Lopper; James M Holton; James L Keck
Journal:  Structure       Date:  2004-11       Impact factor: 5.006

9.  Properties of the PriA helicase domain and its role in binding PriA to specific DNA structures.

Authors:  Hua-Wei Chen; Stella H North; Hiroshi Nakai
Journal:  J Biol Chem       Date:  2004-07-13       Impact factor: 5.157

10.  Conversion of phiX174 viral DNA to double-stranded form by purified Escherichia coli proteins.

Authors:  S Wickner; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

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  42 in total

1.  Multiple C-terminal tails within a single E. coli SSB homotetramer coordinate DNA replication and repair.

Authors:  Edwin Antony; Elizabeth Weiland; Quan Yuan; Carol M Manhart; Binh Nguyen; Alexander G Kozlov; Charles S McHenry; Timothy M Lohman
Journal:  J Mol Biol       Date:  2013-09-07       Impact factor: 5.469

2.  Genetic method to analyze essential genes of Escherichia coli.

Authors:  Katarzyna Hupert-Kocurek; Jay M Sage; Magdalena Makowska-Grzyska; Jon M Kaguni
Journal:  Appl Environ Microbiol       Date:  2007-09-14       Impact factor: 4.792

Review 3.  SSB as an organizer/mobilizer of genome maintenance complexes.

Authors:  Robert D Shereda; Alexander G Kozlov; Timothy M Lohman; Michael M Cox; James L Keck
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Sep-Oct       Impact factor: 8.250

4.  Structural mechanisms of PriA-mediated DNA replication restart.

Authors:  Basudeb Bhattacharyya; Nicholas P George; Tiffany M Thurmes; Ruobo Zhou; Niketa Jani; Sarah R Wessel; Steven J Sandler; Taekjip Ha; James L Keck
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

5.  Yeast two-hybrid analysis of PriB-interacting proteins in replication restart primosome: a proposed PriB-SSB interaction model.

Authors:  Yen-Hua Huang; Min-Jon Lin; Cheng-Yang Huang
Journal:  Protein J       Date:  2013-08       Impact factor: 2.371

6.  Structural analyses of the bacterial primosomal protein DnaB reveal that it is a tetramer and forms a complex with a primosomal re-initiation protein.

Authors:  Yi-Ching Li; Vankadari Naveen; Min-Guan Lin; Chwan-Deng Hsiao
Journal:  J Biol Chem       Date:  2017-08-14       Impact factor: 5.157

Review 7.  Replication Restart in Bacteria.

Authors:  Bénédicte Michel; Steven J Sandler
Journal:  J Bacteriol       Date:  2017-06-13       Impact factor: 3.490

8.  Small-molecule tools for dissecting the roles of SSB/protein interactions in genome maintenance.

Authors:  Duo Lu; Douglas A Bernstein; Kenneth A Satyshur; James L Keck
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-16       Impact factor: 11.205

9.  Functional complementation of UvsX and UvsY mutations in the mediation of T4 homologous recombination.

Authors:  Joshua N Farb; Scott W Morrical
Journal:  Nucleic Acids Res       Date:  2009-02-25       Impact factor: 16.971

10.  The crystal structure of Neisseria gonorrhoeae PriB reveals mechanistic differences among bacterial DNA replication restart pathways.

Authors:  Jinlan Dong; Nicholas P George; Katrina L Duckett; Madeleine A P DeBeer; Matthew E Lopper
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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