Literature DB >> 17567152

Hydrogen peroxide dependent cis-dihydroxylation of benzoate by fully oxidized benzoate 1,2-dioxygenase.

Matthew B Neibergall1, Audria Stubna, Yasmina Mekmouche, Eckard Münck, John D Lipscomb.   

Abstract

Rieske dioxygenases catalyze the reductive activation of O2 for the formation of cis-dihydrodiols from unactivated aromatic compounds. It is known that O2 is activated at a mononuclear non-heme iron site utilizing electrons supplied by a nearby Rieske iron sulfur cluster. However, it is controversial whether the reactive species is an Fe(III)-(hydro)peroxo or an Fe(II)-(hydro)peroxo (or electronically equivalent species formed by breaking the O-O bond). Here it is shown that benzoate 1,2 dioxygenase oxygenase component (BZDO) prepared in a form with the Rieske cluster oxidized and the mononuclear iron in the Fe(III) state can utilize H2O2 as a source of reduced oxygen to form the correct cis-dihydrodiol product from benzoate. The reaction approaches stoichiometric yield relative to the mononuclear Fe(III) concentration, being limited to a single turnover by inefficient product release from the Fe(III)-product complex. EPR and Mössbauer studies show that the iron remains ferric throughout this single turnover "peroxide shunt" reaction. These results strongly support Fe(III)-(hydro)peroxo (or Fe(V)-oxo-hydroxo) as the reactive species because there is no source of additional reducing equivalents to form the Fe(II)-(hydro)peroxo state. This conclusion could be further tested in the case of BZDO because the peroxide shunt occurs very slowly compared with normal turnover, allowing the reactive intermediate to be trapped for spectroscopic analysis. We attribute the slow reaction rate to a forced change in the normally strict order of the substrate binding and enzyme reduction steps that regulate the catalytic cycle. The reactive intermediate is a high-spin ferric species exhibiting an unusual negative zero field splitting and other EPR and Mössbauer spectroscopic properties reminiscent of previously characterized side-on-bound peroxide adducts of Fe(III) model complexes. If the species in BZDO is a similar adduct, its isomer shift is most consistent with an Fe(III)-hydroperoxo reactive state.

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Year:  2007        PMID: 17567152      PMCID: PMC2720163          DOI: 10.1021/bi700120j

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  33 in total

1.  Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters.

Authors:  Bradley J. Wallar; John D. Lipscomb
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Olefin cis-dihydroxylation versus epoxidation by non-heme iron catalysts: two faces of an Fe(III)-OOH coin.

Authors:  Kui Chen; Miquel Costas; Jinheung Kim; Adrianne K Tipton; Lawrence Que
Journal:  J Am Chem Soc       Date:  2002-03-27       Impact factor: 15.419

3.  Hydrogen peroxide-coupled cis-diol formation catalyzed by naphthalene 1,2-dioxygenase.

Authors:  Matt D Wolfe; John D Lipscomb
Journal:  J Biol Chem       Date:  2002-10-25       Impact factor: 5.157

4.  Metabolism of benzoic acid by bacteria. Accumulation of (-)-3,5-cyclohexadiene-1,2-diol-1-carboxylic acid by mutant strain of Alcaligenes eutrophus.

Authors:  A M Reiner; G D Hegeman
Journal:  Biochemistry       Date:  1971-06-22       Impact factor: 3.162

5.  Single turnover chemistry and regulation of O2 activation by the oxygenase component of naphthalene 1,2-dioxygenase.

Authors:  M D Wolfe; J V Parales; D T Gibson; J D Lipscomb
Journal:  J Biol Chem       Date:  2000-10-30       Impact factor: 5.157

6.  Modulation of substrate binding to naphthalene 1,2-dioxygenase by rieske cluster reduction/oxidation.

Authors:  Tran-Chin Yang; Matt D Wolfe; Matthew B Neibergall; Yasmina Mekmouche; John D Lipscomb; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2003-02-26       Impact factor: 15.419

7.  Purification and characterization of an oxygenase component in benzoate 1,2-dioxygenase system from Pseudomonas arvilla C-1.

Authors:  M Yamaguchi; H Fujisawa
Journal:  J Biol Chem       Date:  1980-06-10       Impact factor: 5.157

8.  Rates of the phthalate dioxygenase reaction with oxygen are dramatically increased by interactions with phthalate and phthalate oxygenase reductase.

Authors:  Michael Tarasev; Frank Rhames; David P Ballou
Journal:  Biochemistry       Date:  2004-10-12       Impact factor: 3.162

Review 9.  High-valent iron in chemical and biological oxidations.

Authors:  John T Groves
Journal:  J Inorg Biochem       Date:  2006-03-03       Impact factor: 4.155

10.  Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.

Authors:  B Kauppi; K Lee; E Carredano; R E Parales; D T Gibson; H Eklund; S Ramaswamy
Journal:  Structure       Date:  1998-05-15       Impact factor: 5.006

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  27 in total

1.  Characterization of a high-spin non-heme Fe(III)-OOH intermediate and its quantitative conversion to an Fe(IV)═O complex.

Authors:  Feifei Li; Katlyn K Meier; Matthew A Cranswick; Mrinmoy Chakrabarti; Katherine M Van Heuvelen; Eckard Münck; Lawrence Que
Journal:  J Am Chem Soc       Date:  2011-04-25       Impact factor: 15.419

2.  Iron-oxo complexes: elusive iron(V) species identified.

Authors:  Aidan R McDonald; Lawrence Que
Journal:  Nat Chem       Date:  2011-09-23       Impact factor: 24.427

Review 3.  Oxygen activation by mononuclear nonheme iron dioxygenases involved in the degradation of aromatics.

Authors:  Yifan Wang; Jiasong Li; Aimin Liu
Journal:  J Biol Inorg Chem       Date:  2017-01-13       Impact factor: 3.358

Review 4.  Finding intermediates in the O2 activation pathways of non-heme iron oxygenases.

Authors:  E G Kovaleva; M B Neibergall; S Chakrabarty; J D Lipscomb
Journal:  Acc Chem Res       Date:  2007-06-14       Impact factor: 22.384

5.  Rate-Determining Attack on Substrate Precedes Rieske Cluster Oxidation during Cis-Dihydroxylation by Benzoate Dioxygenase.

Authors:  Brent S Rivard; Melanie S Rogers; Daniel J Marell; Matthew B Neibergall; Sarmistha Chakrabarty; Christopher J Cramer; John D Lipscomb
Journal:  Biochemistry       Date:  2015-07-21       Impact factor: 3.162

6.  Oxy intermediates of homoprotocatechuate 2,3-dioxygenase: facile electron transfer between substrates.

Authors:  Michael M Mbughuni; Mrinmoy Chakrabarti; Joshua A Hayden; Katlyn K Meier; Joseph J Dalluge; Michael P Hendrich; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2011-11-01       Impact factor: 3.162

7.  Equilibrating (L)FeIII-OOAc and (L)FeV(O) Species in Hydrocarbon Oxidations by Bio-Inspired Nonheme Iron Catalysts Using H2O2 and AcOH.

Authors:  Williamson N Oloo; Rahul Banerjee; John D Lipscomb; Lawrence Que
Journal:  J Am Chem Soc       Date:  2017-11-27       Impact factor: 15.419

Review 8.  Dioxygen activation by nonheme iron enzymes with the 2-His-1-carboxylate facial triad that generate high-valent oxoiron oxidants.

Authors:  Subhasree Kal; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2017-01-10       Impact factor: 3.358

9.  Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Authors:  Rahul Banerjee; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2013-06-13       Impact factor: 3.162

10.  Demonstration of a peroxide shunt in the tetrahydropterin-dependent aromatic amino acid monooxygenases.

Authors:  Jorge Alex Pavon; Paul F Fitzpatrick
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

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