Literature DB >> 15461452

Rates of the phthalate dioxygenase reaction with oxygen are dramatically increased by interactions with phthalate and phthalate oxygenase reductase.

Michael Tarasev1, Frank Rhames, David P Ballou.   

Abstract

The phthalate dioxygenase system, which catalyzes the dihydroxylation of phthalate to form its cis-dihydrodiol (DHD), has two components: phthalate dioxygenase (PDO), a multimer with one Rieske-type [2Fe-2S] and one Fe(II) center per monomer, and phthalate dioxygenase reductase (PDR), which contains flavin mononucleotide (FMN) and a plant-like ferredoxin [2Fe-2S] center. PDR is responsible for transferring electrons from NADH to the Rieske center of PDO, and the Rieske center supplies electrons to the mononuclear center for the oxygenation of substrate. Reduced PDO (PDO(red)) that lacks Fe(II) at the mononuclear metal site (PDO-APO) reacts slowly with O(2) (1.4 x 10(-3) s(-1) at 125 microM O(2) and 22 degrees C), presumably in a direct reaction with the Rieske center. Binding of phthalate and/or PDR(ox) to reduced PDO-APO increases the reactivity of the Rieske center with O(2). When no PDR or phthalate is present, the oxidation of the Rieske center in native PDO(red) [which contains Fe(II) at the mononuclear site] occurs in two phases (approximately 1 and 0.1 s(-1) at 125 mM O(2), 23 degrees C), both much faster than in the absence of Fe(II), presumably because in this case O(2) reacts at the mononuclear Fe(II). Addition of PDR(ox) to native PDO(red) resulted in a large fraction of the Rieske center being oxidized at 5 s(-1), and the addition of phthalate resulted in about 70% of the reaction proceeding at 42 s(-1). With both PDR(ox) and phthalate present, most of the PDO(red) (approximately 80-85%) oxidizes at 42 s(-1), with the remaining oxidizing at approximately 5 s(-1). Thus, the binding of phthalate or PDR(ox) to PDO(red) each results in greater reactivity of PDO with O(2). The presence of both the substrate and PDR was synergistic, making PDO fully catalytically active. A model that explains the observed effects is presented and discussed in terms of PDO subunit cooperativity. It is proposed that, during oxidation of reduced PDO, each of two Rieske centers on separate subunits transfers an electron to the Fe(II) mononuclear center on a third subunit. This explanation is consistent with the observed multiphasic kinetics of the oxidation of the Rieske center and is being further tested by product analysis experiments.

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Year:  2004        PMID: 15461452     DOI: 10.1021/bi0490587

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

Review 1.  Oxygen activation by mononuclear nonheme iron dioxygenases involved in the degradation of aromatics.

Authors:  Yifan Wang; Jiasong Li; Aimin Liu
Journal:  J Biol Inorg Chem       Date:  2017-01-13       Impact factor: 3.358

2.  Radical intermediates in monooxygenase reactions of rieske dioxygenases.

Authors:  Sarmistha Chakrabarty; Rachel N Austin; Dayi Deng; John T Groves; John D Lipscomb
Journal:  J Am Chem Soc       Date:  2007-03-07       Impact factor: 15.419

3.  Similar enzymes, different structures: phthalate dioxygenase is an alpha3alpha3 stacked hexamer, not an alpha3beta3 trimer like "normal" Rieske oxygenases.

Authors:  Michael Tarasev; Catherine S Kaddis; Sheng Yin; Joseph A Loo; John Burgner; David P Ballou
Journal:  Arch Biochem Biophys       Date:  2007-07-14       Impact factor: 4.013

4.  Near-IR MCD of the nonheme ferrous active site in naphthalene 1,2-dioxygenase: correlation to crystallography and structural insight into the mechanism of Rieske dioxygenases.

Authors:  Takehiro Ohta; Sarmistha Chakrabarty; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2008-01-12       Impact factor: 15.419

5.  Rate-Determining Attack on Substrate Precedes Rieske Cluster Oxidation during Cis-Dihydroxylation by Benzoate Dioxygenase.

Authors:  Brent S Rivard; Melanie S Rogers; Daniel J Marell; Matthew B Neibergall; Sarmistha Chakrabarty; Christopher J Cramer; John D Lipscomb
Journal:  Biochemistry       Date:  2015-07-21       Impact factor: 3.162

6.  Evidence that the fosfomycin-producing epoxidase, HppE, is a non-heme-iron peroxidase.

Authors:  Chen Wang; Wei-chen Chang; Yisong Guo; Hui Huang; Spencer C Peck; Maria E Pandelia; Geng-min Lin; Hung-wen Liu; Carsten Krebs; J Martin Bollinger
Journal:  Science       Date:  2013-10-10       Impact factor: 47.728

7.  High levels of expression of the iron-sulfur proteins phthalate dioxygenase and phthalate dioxygenase reductase in Escherichia coli.

Authors:  Sunil Jaganaman; Alex Pinto; Michael Tarasev; David P Ballou
Journal:  Protein Expr Purif       Date:  2006-09-15       Impact factor: 1.650

8.  The "bridging" aspartate 178 in phthalate dioxygenase facilitates interactions between the Rieske center and the iron(II)--mononuclear center.

Authors:  Michael Tarasev; Alex Pinto; Duke Kim; Sean J Elliott; David P Ballou
Journal:  Biochemistry       Date:  2006-08-29       Impact factor: 3.162

Review 9.  Versatility of biological non-heme Fe(II) centers in oxygen activation reactions.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Nat Chem Biol       Date:  2008-03       Impact factor: 15.040

10.  Hydrogen peroxide dependent cis-dihydroxylation of benzoate by fully oxidized benzoate 1,2-dioxygenase.

Authors:  Matthew B Neibergall; Audria Stubna; Yasmina Mekmouche; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2007-06-14       Impact factor: 3.162

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